Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq94309 104 6e-19 >seq94309 Length=2889 Score = 104 bits (114), Expect = 6e-19 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||||||||| ||||||| |||| | |||||| | | ||||| |||| | |||||||| Sbjct 2130 ATGTACTTTCCACAAATTCGGTGCCTCGGGCGACGTTGAAAAGCACGACGCCCTCTGCAT 2071 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||| ||| ||| | || ||||| ||||| ||||||||||| |||||||||||| Sbjct 2070 CCTACCGCTCAACATTGTGAACGAAAAGATTTACATTTTCCTTTGGTTCTGGTTC 2016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12440603916000