Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28030 217 3e-51 seq124498 120 6e-22 seq124497 107 4e-18 >seq28030 Length=5412 Score = 217 bits (240), Expect = 3e-51 Identities = 488/717 (68%), Gaps = 27/717 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||| || |||||||| || || ||||||||| | | | | |||| Sbjct 1971 CTTGCCTTTTTCGCTGCATCTGACGGAATCGTTAATGAGAACATCGTCGAGCGTTTCACC 1912 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 ||||| || |||| || ||||| |||||||| ||||| ||| | ||||| || | Sbjct 1911 GCTGAGGTCCAAGTTACT--GAAGCGCGATGCTTCTATGGCTTTCAGGTCGCCATCGAAA 1854 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | |||||||| ||||| | ||| | |||| || ||| |||| | || Sbjct 1853 ACATTCACTCTGAAATGTACTCATTACTCATTGACACCTATATCAAGGATAAAGAGGA-- 1796 Query 42601 GTAACGGG----CTGTTCAAGGCCATGGAGACGATGCCCTGC-ATCAAGAAGAAGGCGGA 42655 || ||| || || || ||| |||| | | |||||| || | |||||||| | Sbjct 1795 --AAAGGGTCGCCTCTTTAACGCCCTGGACAACTT-CCCTGCTATTCAAAAGAAGGCTGC 1739 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| | || |||| || | || || | || || ||| | | |||| || Sbjct 1738 TTGGGCTCAAAAGTGGACGCAGTCTACCTCTGCTTCCTTTGGAGAGCGAATCATAGCTTT 1679 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | ||||| || || || |||||||| || |||| || ||||| |||||||| ||| | Sbjct 1678 TGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCTTTGCTTCCATTTTCTGGCTGAAGAA 1619 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||||| || ||||| ||||| ||||||||||| | ||||| |||| Sbjct 1618 GCGTGGACTC-ATGCCTGGGCTCACGTTCTCTAACGAACTCATTTCTCGTGACGAAGGGC 1560 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 | || | ||||||||||||||| ||||| || || ||| | |||||||| || Sbjct 1559 TTCACACAGACTTTGCCTGCCTCATGTTC---AGACATCTCGCTAATAAGCCCTCTGTGG 1503 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 ||||| || || ||| | || ||||| | |||||||| ||||||||||| || Sbjct 1502 AGCGGATCACGGAAATCGTTCGAGATGCCGTTGCGATCGAGAGCGAGTTCCTCACAGAGG 1443 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT-GTGCAAGTACATCCAGTAC 43013 | || |||||| || |||| ||||| || ||| |||| |||||||| | | Sbjct 1442 CTCTTCCCGTGCGAATGCTCGGAATGAATTGTGATTCCATGGTGC-AGTACATCAAATTT 1384 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC---CTCTACAACACGCCGTGC 43070 ||||| || | ||||| || ||| | | | ||| | ||||||| | | Sbjct 1383 GTCGCGGATCGACTCCT-TG-TAGA-GCTTGACTGCCCCAAGATCTACAATAATGAAAAC 1327 Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 ||||| ||||||||||| || || || |||| || ||||| ||||| || |||||| Sbjct 1326 CCCTTTGACTTTATGGAAAATATTTCCCTGGATGGAAAGACAAACTTCTTTGAGAAG 1270 >seq124498 Length=1304 Score = 120 bits (132), Expect = 6e-22 Identities = 258/386 (67%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| |||| | |||||| ||||| || ||||| || || ||| || |||||| Sbjct 386 ACCTCATCCGGTGCGCTGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTG 327 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 || |||| ||| ||||||||||| |||||| || |||||||||||||| | ||| Sbjct 326 CCTAGGTTCTGTTGATTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTT 267 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 || ||||||| || | | | || | | ||||| | |||| |||| | Sbjct 266 CCCGTCTCGATTTGCGACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTCGC 207 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 | | || || || ||||| || ||||| | ||| || | |||||| Sbjct 206 CTATAATTCCCTTCCGCCTCATACTTCAAGTACAAGCTCTCAAAGGCCTCTCCCCAGCAG 147 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 || ||| || |||| | ||||||||| | ||||| |||| | || | || Sbjct 146 TCCGCTAATCCAGGGCTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCACA 87 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 | || ||||||||| || |||||||||||||| | ||| | |||||||| || | || Sbjct 86 CGCTTCATGAAGAGATCCGGGATCCAGAGGGCGTAGAACAAGTCCCTGGCCCGGTTTTCC 27 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTC 245091 || | || |||||||||| ||||| Sbjct 26 TCGGCCCCCGTGTTCTTCCGTAGCTC 1 >seq124497 Length=910 Score = 107 bits (118), Expect = 4e-18 Identities = 288/430 (67%), Gaps = 14/430 (3%) Strand=Plus/Minus Query 245188 GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 |||| ||| ||| || || || | ||||| |||| |||||||||||| |||||| Sbjct 891 GTTGTAGACGCGGAGAAGGGGAACGAGTCCGTTGGAGTATCCGTTGGTGCCCCCGATGTA 832 Query 245248 GGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG----CCTAGTCCGCCGGCGTGCTTGG 245303 | |||||| ||| || ||| |||||||| || | ||||| || ||||| Sbjct 831 GCTCCCCTTGGCCCGGA---TGCA-ATGGACATTGATCCCGATCCCGCCAGCAAACTTGG 776 Query 245304 AGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGT 245363 |||||| ||| ||| | ||||| |||||||| ||| |||||| |||| Sbjct 775 AGATGATGGCCGTTTGCTTAAGCGTGTCGTAGATGCCCTCGATGGAGTCCGAGGCCATGG 716 Query 245364 TGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGC 245423 |||| | ||||||||||| ||||| || ||| || | |||||| || |||||| Sbjct 715 TGAGTAAGAAGCAGGAGGAGAGCTGTGGTCGGGGTGTGGCTGCGTTGAAGAGCGTGGGGG 656 Query 245424 TGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT 245483 ||| || |||||||| | ||||||| |||||||| || | || | || Sbjct 655 AGGCATGTGTAAAGTATCCCTGGGAGAGGAGGTTGTACGTCTCGATGATGCTCTCCACGT 596 Query 245484 TGTCGCCGTGGATCTGCA-GGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATG-G 245540 || |||||||| || || | || | ||| | ||||||| ||||| ||| | | Sbjct 595 CTTCCCCGTGGATGCCCACGGACACA-CGCATCAACATGTGCTGTGGGCG-CTCCACGAT 538 Query 245541 GTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGT 245600 | | || | |||||| | |||| ||||| || |||||||| || ||||| || Sbjct 537 CTTCTTCCCG-ATCTTGAGGAGGTAGCTCCGCTCCAGGGTCTTGAAGCCGAAGTAGTTGT 479 Query 245601 AGCCAAAGTC 245610 || |||||| Sbjct 478 AGGAAAAGTC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940932307468160