Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq61270 152 5e-32 >seq61270 Length=8000 Score = 152 bits (168), Expect = 5e-32 Identities = 273/396 (69%), Gaps = 2/396 (1%) Strand=Plus/Minus Query 20189 TTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACA 20248 || |||| |||||||| |||| | || ||||| ||||| || ||||||| || ||| Sbjct 7587 TTATAGACATGGGCATCCCCCAGGGAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACA 7528 Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| |||| |||| |||||||||||||||||| || || || | |||| Sbjct 7527 TGGGCCATCATGATGGTTAGAAGGGCATAGCTGGCAATGTTAAATGGTACACCAAGACCC 7468 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG- 20367 || || | || | |||||||| || || |||||||| |||| || ||||| || || Sbjct 7467 ATATCAGCAGAGCGCTGATACATTTGGCAAGAAAGCTCCCCGTTCGCCACATAGAACTGT 7408 Query 20368 ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACA 20427 ||| || |||| || || || | ||||| || | || || |||||| ||||| Sbjct 7407 ACAAGAC-AGTGGCACGGAGGCAAGGCCATTAAATGAAGATCTCTCGCGTTCCAAGCACA 7349 Query 20428 CATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTG 20487 ||| | || | | ||||| ||||||| | || || || | || | | | || Sbjct 7348 CATCACCATACGACGATCGTCCGGATTACTCTTAATGGTCTCAATAACCTTCCCAAGCTG 7289 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 || | |||| || | ||||| |||| | | | ||| |||| ||||||||||| Sbjct 7288 ATCCACACCCTTCCCAGCGTAGTCTGCATGCATGGTATCATACTCCGCGCCAAAGTGCCT 7229 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 ||| || || || || || || || ||||| || || Sbjct 7228 CCATTGAAACCCATAGACCGGCCCTAAATCTCCTTC 7193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439780459349440