Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq11950 158 3e-33 seq271769 129 1e-24 seq147988 107 5e-18 >seq11950 Length=2906 Score = 158 bits (174), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || ||||| |||||||||| ||| ||| ||||| || || || |||| Sbjct 432 TCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGA 373 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || ||||| | ||| ||||| || ||||| |||||||||||| ||||| Sbjct 372 GAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGA---TCTGG 316 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||||||||||||||| || || || ||||| || || | || | || Sbjct 315 GGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTC 256 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| || || || || |||||||||||||| || |||||| Sbjct 255 AACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 134 bits (148), Expect = 3e-26 Identities = 171/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | || || | |||| ||| ||| || ||||| || |||||| Sbjct 1346 TGTCCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 1287 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || || || | ||| ||||| |||||||||| |||||| ||| ||| Sbjct 1286 GAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGA---TCT 1230 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| ||||||||||| |||||||| || | || || ||||| |||| || | Sbjct 1229 GGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGC 1170 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || || || || || || ||||||||||| ||||||||| Sbjct 1169 TCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| ||||| || ||||||| || ||| ||||| |||||||| || | Sbjct 660 TCCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGA 601 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| |||| || || || ||||| || |||||||| ||| ||||| Sbjct 600 CAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGA---TCTGG 544 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || || || || || || || || ||||| || || | || | || Sbjct 543 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTC 484 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| || || || || |||||||||||||| || |||||| Sbjct 483 AACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 113 bits (124), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || ||||| || ||||||| || ||| || || ||||| ||||||| Sbjct 204 TCCACCTCGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 145 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | ||||||||| || ||||| |||||||| || ||||| Sbjct 144 AAGAGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGG---TCTGG 88 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| || || ||||| || || || || || || || | ||| | || Sbjct 87 GGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTC 28 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGT 288449 || ||||| ||||| ||||| || || Sbjct 27 GACCTCGAGAGTGATGGTCTTTCCAGT 1 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| | ||| || | ||| | ||| |||||||| || || ||||| | Sbjct 1116 TCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGA 1057 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || | ||| || || |||||||||| |||||| || ||||| Sbjct 1056 CAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGG---TCTGG 1000 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| || || || || || | ||||| ||||| || | ||| | || Sbjct 999 GGGAATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTC 940 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||||| ||||| || || || ||||||||| Sbjct 939 AACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 >seq271769 Length=1390 Score = 129 bits (142), Expect = 1e-24 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| || ||||| || || | || || || ||||||||| Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | |||||| ||| |||||| |||||||| ||||||||||| || | |||||||| Sbjct 788 AAACGCTGCTGA---TCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTC 732 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || || || || ||||| ||||| || || || ||||||||| Sbjct 731 TCGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 672 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 671 AAGATTTGCAT 661 >seq147988 Length=4520 Score = 107 bits (118), Expect = 5e-18 Identities = 234/346 (68%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 || || ||| | ||||||||||||||||| || || || ||||||||| ||||| || Sbjct 2226 CAGGCATCTACTTCAGAGTTGTATGGAAAGGTTCAGGAGGTTCCTCAGAAGGAAACGACG 2167 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 72535 || ||||||||||| || || || || || || ||| | || || || ||| || || | Sbjct 2166 CCTTTTTATCCTCGTAGTCCCTATGGCGTGGCCAAGCTCTATGCCTACTGG-TCCGTGAT 2108 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || | ||| ||| | ||| | |||| || || || ||| || || || ||||| Sbjct 2107 TAACTTCCGGGAGGCCTATGATATGTTTGCCTGTAATGGGATCCTCTTTAACCATGAGAG 2048 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| ||||| | | || || || | || || ||| || || || | || Sbjct 2047 TCCACGGAGAGGAGAGAACTTTGTCACGAGGAAGATTACGCGCTCTGTTGCCAAGA--TT 1990 Query 72656 CAAT--GGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 || | || || | | ||| | | || || || | || |||| | ||||||||| Sbjct 1989 CAGTTGGGGCTCCTAGATTGCTTTGAACTTGGAAACTTGGACTCCAAGCGTGATTGGGGA 1930 Query 72714 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAG 72759 |||| ||||| || ||| ||| ||||||| | ||| |||| |||| Sbjct 1929 CATGCCAAGGACTATGTACAAGGAATGTGGCTCATGTTGCAGCAAG 1884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175292164841648