Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq147988 107 4e-18 >seq147988 Length=4520 Score = 107 bits (118), Expect = 4e-18 Identities = 234/346 (68%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 || || ||| | ||||||||||||||||| || || || ||||||||| ||||| || Sbjct 2226 CAGGCATCTACTTCAGAGTTGTATGGAAAGGTTCAGGAGGTTCCTCAGAAGGAAACGACG 2167 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || ||||||||||| || || || || || || ||| | || || || ||| || || | Sbjct 2166 CCTTTTTATCCTCGTAGTCCCTATGGCGTGGCCAAGCTCTATGCCTACTGG-TCCGTGAT 2108 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || | ||| ||| | ||| | |||| || || || ||| || || || ||||| Sbjct 2107 TAACTTCCGGGAGGCCTATGATATGTTTGCCTGTAATGGGATCCTCTTTAACCATGAGAG 2048 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 ||| ||||| | | || || || | || || ||| || || || | || Sbjct 2047 TCCACGGAGAGGAGAGAACTTTGTCACGAGGAAGATTACGCGCTCTGTTGCCAAGA--TT 1990 Query 68645 CAAT--GGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 68702 || | || || | | ||| | | || || || | || |||| | ||||||||| Sbjct 1989 CAGTTGGGGCTCCTAGATTGCTTTGAACTTGGAAACTTGGACTCCAAGCGTGATTGGGGA 1930 Query 68703 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAG 68748 |||| ||||| || ||| ||| ||||||| | ||| |||| |||| Sbjct 1929 CATGCCAAGGACTATGTACAAGGAATGTGGCTCATGTTGCAGCAAG 1884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1098801668319600