Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq124498 131 2e-25 seq182767 107 2e-18 >seq124498 Length=1304 Score = 131 bits (144), Expect = 2e-25 Identities = 229/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 114513 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 114572 ||||||| | ||||||||| || | ||| || | ||||||||||| | ||||| ||||| Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 114573 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 114632 | |||||| ||| || ||||||||||| ||||| || ||||| |||||||| |||| | Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTTGCG 251 Query 114633 ACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 114691 ||| | || |||| ||||| | | | | | || | || || | | ||| ||| Sbjct 250 ACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTCGCCTATAAT-TCCCTTCC 192 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 |||| ||||| ||| | | ||||| | || ||| | || | | || || Sbjct 191 GCCTCATACTTCAAGTACAAGCTCTCAAAGGCCTCTCCCCAGCAGTCCGCTAATCCAGGG 132 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || || ||||| | | ||| ||| |||| || ||||||||||||||||| Sbjct 131 CTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCACACGCTTCATGAAGAGA 72 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATccc 114842 || ||||||||||| || |||| | |||| Sbjct 71 TCCGGGATCCAGAGGGCGTAGAACAAGTCCC 41 >seq182767 Length=2084 Score = 107 bits (118), Expect = 2e-18 Identities = 287/435 (66%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 113612 CCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTT 113671 || || ||||| || ||||||| |||| | ||||| |||| | ||| | ||| Sbjct 1982 CCTGTTTTGAGTCCAAGCTTCCACCCATAGAAGTGCATGGAGGTGAGCTTTCC-ATAGTT 1924 Query 113672 GGACTTTCC-ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGC 113730 || || | | ||| | || | ||| ||| ||||| ||||| || ||||| || Sbjct 1923 GGGCTGTGCGATGTGAATATTGAGACTCTGGCTCTGATCAATGAACGCCCCTCGATCTGC 1864 Query 113731 CGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAAT 113790 ||||| | || | |||| ||| ||||| || || | ||||| ||| || Sbjct 1863 AGCCATTTGAAGGATGGTCTTCTGTGAGATCTCCCAGACGGTCTTATAGAGCGCCTTGAT 1804 Query 113791 ATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATC--- 113847 ||||| || || ||| ||| ||| | ||| ||| ||| | || | || Sbjct 1803 GTCATCAGGAATTTCCGGGATCCCTTGAACGGATCCATTG---TTGGCAATTATATTTTG 1747 Query 113848 CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGAC 113907 |||||| |||| ||||||| ||| | |||||||| | ||||| | || || Sbjct 1746 CTTCATGTCCTCATCCCAGAGATCAAGTTCCGTGAGATCCCGGAGAAGATGATGGTTCAC 1687 Query 113908 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAA 113967 || ||||| || | |||| |||| ||||| |||| ||||| | ||| | Sbjct 1686 GACCTGGAACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGAT 1627 Query 113968 GCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAG 114027 || ||| ||||| |||| |||||| || |||||||| ||||||||||| |||| |||||| Sbjct 1626 GCCCTCGTTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCAAGAGAAG 1567 Query 114028 GCTGTTACGGAGACC 114042 | ||| ||||| || Sbjct 1566 GGAGTTGCGGAGGCC 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595198527417280