Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq11950 125 8e-24 seq11106 91.5 2e-13 seq1105 91.5 2e-13 seq271769 82.4 8e-11 >seq11950 Length=2906 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||||||||| ||||||| ||| || || |||| ||||||||||| |||||||| Sbjct 623 TCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 564 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| |||||||| || | || | | |||||||| | ||| | || | |||| | Sbjct 563 ATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGT-CTTGAATCTTAGCCTTGACGTT 505 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || || || | ||||| |||||||| ||||| ||||| || Sbjct 504 CTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGAC 445 Query 42197 AAAGATTTGCATT 42209 |||||||||||| Sbjct 444 GAAGATTTGCATT 432 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | || ||||| || | || |||||||||||| || || || | | Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| ||||||||||| |||||||| ||||| |||||||| || | || Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| | ||| | || | |||| || | | ||||| | || || Sbjct 767 ATTCCCTCCTTGT-CTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAAC 709 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| || || || || ||||| ||||| ||||||||| Sbjct 708 TTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | || |||||||| ||| ||| |||||||| ||||| || | | Sbjct 1115 CCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGAC 1056 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || || ||||| |||||||| || | ||||||||||| | || Sbjct 1055 AAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 996 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||| | ||| | || || || | | | | |||||| | || || Sbjct 995 ATTCCTTCCTTGT-CTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAAC 937 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| || || || || || || |||||||| |||||| Sbjct 936 CTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| | ||||| || | || || || ||||| || || || Sbjct 395 TCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAG 336 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||| || || | || | | || || ||| ||| || |||| || Sbjct 335 ATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTC 276 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || || | ||||| |||||||| ||||| ||||| || Sbjct 275 TCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACG 216 Query 42198 AAGATTTGCATT 42209 |||||||||||| Sbjct 215 AAGATTTGCATT 204 >seq11106 Length=1565 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 370 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTA 311 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 310 TACTATCGAGGATTG 296 >seq1105 Length=552 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 214 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTA 273 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 274 TACTATCGAGGATTG 288 >seq271769 Length=1390 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || ||||| | || || |||||||| |||||||| | Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||| || | || | | ||||| ||| ||| || || | || Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCT 731 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | || ||| | ||||| || | |||||||| |||||||| || ||||| || | Sbjct 730 CGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 671 Query 42199 AGATTTGCAT 42208 |||||||||| Sbjct 670 AGATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541253051181440