Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11950 132 5e-26 seq271769 96.9 3e-15 seq78081 95.1 1e-14 >seq11950 Length=2906 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 ||||| || ||||||| || ||||| ||||||||||||||||| | || || || | Sbjct 419 CTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCA 360 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 |||||||| ||||| |||||| | ||||| ||||| || || || || ||||||||||| Sbjct 359 TCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTA 300 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || ||| | || || ||| || || |||| || | Sbjct 299 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATT 240 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| || | ||| || ||||| ||||||||| Sbjct 239 GTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 ||||| || ||||||| || ||||| |||||||| || ||||| | | |||||| || Sbjct 647 CTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCG 588 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || ||||||||||| || ||||||| |||||||| || || |||||||| || || Sbjct 587 TCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTG 528 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| || ||| | || || ||| || || |||| || | Sbjct 527 TCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATT 468 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| || | ||| || ||||| ||||||||| Sbjct 467 GTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || || | |||| || || || ||||||||||| || || | Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || ||||||||||| || ||||||| |||||||| || || ||| Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || ||||| || || ||| || ||| | || || ||| || ||| Sbjct 767 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACT 708 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | |||||| || || | || || || |||||||||||| Sbjct 707 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || || ||||||||||||||||| || | | ||| || | || Sbjct 1101 AAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATC 1042 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| |||||||| || | || | ||||||||||| || ||||||||||| || || Sbjct 1041 CTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC 982 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || || | || || || | ||| | ||| Sbjct 981 TTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGT 922 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| ||||| | |||||| || || || |||||| Sbjct 921 CTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || || |||||||| || | || |||||| | || || || ||| Sbjct 1319 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGTTGC 1260 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | |||||||| || || |||||||||||||| || || || || Sbjct 1259 TTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 1200 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || ||| | || || || | ||| | ||| ||||| || Sbjct 1199 GTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGTG 1140 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || |||||||| |||||| Sbjct 1139 AGGGTCTTGACGAAAATCTGCATT 1116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 ||||| || ||||||| |||||||| || ||||| ||||| || | | || || | Sbjct 191 CTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCA 132 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| || || || || ||| | || || ||||||||||| || || |||||||| || Sbjct 131 TCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTG 72 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| ||| | |||||| | || || || | ||| | | Sbjct 71 TCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGAGTGATG 12 Query 64409 GTCTTGCCGGT 64419 ||||| || || Sbjct 11 GTCTTTCCAGT 1 >seq271769 Length=1390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||| || | || |||||||||||||| || | || Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | |||||||| || || ||||||||||| || || || || || ||| || ||| Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | ||||| || ||||| || | || | ||||||||| || | || || ||||| Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 64436 ATTTGCAT 64443 |||||||| Sbjct 668 ATTTGCAT 661 >seq78081 Length=4256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||||||||| || | | ||| || | || || |||||||| |||||| | | Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | ||||| || || ||||| ||||| || || ||||| ||||| ||| ||| | Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| || || || || | || | ||| || || || | || || |||| Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 3155 AAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497842231455040