Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq182767 163 3e-35 >seq182767 Length=2084 Score = 163 bits (180), Expect = 3e-35 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | || || |||| ||||||||||||||||||||||| || ||||| || |||||| Sbjct 1561 AACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACAAATCCTGGGGAACAAC 1620 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 ||| |||| ||| |||||||||| | ||| | | || || ||| | ||||| ||| Sbjct 1621 GAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGTCCTCTCTGGGGAGTTC 1680 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAG 95268 | ||| | ||| | || || || ||||| || ||| || | | | |||| || || Sbjct 1681 CAGGTCGTGAACCATCATCTTCTCCGGGATCTCACGGAACTTGATCTCTGGGATG---AG 1737 Query 95269 GTCAAGAACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGCAAATACCG 95325 | || ||| ||| || |||||| || ||||| || |||||| |||| || Sbjct 1738 GACATGAAGCAAAATATAATTGCCAACAATGGATCCGTTCAAGGGATCCCGGAAATTCCT 1797 Query 95326 GAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 || ||||||||||||||||| |||||||| ||||||||| | ||| Sbjct 1798 GATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATCTCACAG 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492938387111360