Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2802 145 3e-30 >seq2802 Length=2961 Score = 145 bits (160), Expect = 3e-30 Identities = 296/435 (68%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 34265 AGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCA 34324 || |||||||||||||| ||||||| ||||| | |||||||| ||| || || || Sbjct 1194 AGTAATCGTCGATTGTTGAACCAGTCTACCCAGTTCAGTGTGGCATATTCAACATCATCA 1135 Query 34325 CGGTTTTTCCA--GCTCTT-ACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTC 34381 |||||| || ||| | | | |||||||| ||||| ||||| |||| || | Sbjct 1134 ATACCTTTCCATGGCCCTTTATGCCGAATTACCTCAGCTTTATAAAGCGCATTAATTGCC 1075 Query 34382 TCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCT 34441 |||||||| || ||||||||||| || || | || || ||| || | | | || Sbjct 1074 TCAGCCATTGCATTGTCATACGAATCACCGATGCTACCCACTGACGCTTCAATTTCAGCA 1015 Query 34442 TCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGG 34501 || | ||| || || || | ||||| |||||| ||| | |||| |||||| Sbjct 1014 TCAGCCAATCGTTCGGTGTAACGGATTGACAGGTACTGACTGCCGTGATCGGAGTGATGA 955 Query 34502 ATGGTGCCAGACGGACGA---CGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAAT 34558 || || | | | | | ||| | ||||||||||| ||||||||||| | Sbjct 954 ATCAACCCTTTCTCAGGCTTCCTGCACCAAATTGCCTGCTCCAGTGCATCCAGCACCAGC 895 Query 34559 GTCGTTTCCATAGACGATGAG--ACCCGCCACCCCACGATGTATCCGGCAAACACATCAA 34616 | ||||||| ||| ||| |||||||| || ||||| || | | | | ||||| | Sbjct 894 GGAGTTTCCAGCGAC--TGACTCACCCGCCAACCTACGATATAACGTGAATAGACATCGA 837 Query 34617 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 34676 | | ||| || |||||||| || || ||| ||| || ||||| | ||||||||||| Sbjct 836 TAACAAATGCGACATAGACAAAACCTGACCAGGTGGGGATATAAGTTATATCAGCCACCC 777 Query 34677 ACAGCTGGTCAGGTC 34691 | ||||| | ||||| Sbjct 776 AAAGCTGATTAGGTC 762 Score = 84.2 bits (92), Expect = 9e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 35084 GGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGC 35143 ||||||||| |||||||| |||||||||||| || |||| ||| | || || || | Sbjct 363 GGCGGTCGAGCTCCGCCTGCGCAAAATAAGCAGAGGCCTTGCGTAATATCTCATTGGCAC 304 Query 35144 GGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTC 35192 |||||| |||| |||| || |||||||| |||| ||| | | ||| || Sbjct 303 GGCGCAATTCAAGATTCTCGCGTTCCAGGGCTTTGAGATGTTCACGCTC 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198067625256528