Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq124498 134 2e-26 seq182767 120 4e-22 seq31316 86.0 8e-12 >seq124498 Length=1304 Score = 134 bits (148), Expect = 2e-26 Identities = 232/332 (70%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 ||||||| | ||||||||| || | ||| || | ||||||||||| | ||||| ||||| Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | |||||| ||| || |||||||||||||||||||| ||||| |||||||| |||| | Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTTGCG 251 Query 116594 ACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 116652 ||| | || |||| ||| | | | | | | || | || || | | ||| ||| Sbjct 250 ACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTCGCCTATAAT-TCCCTTCC 192 Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGG 116711 |||| ||||| ||| | | |||||| | || ||| |||| || | | || || Sbjct 191 GCCTCATACTTCAAGTACAAGCTCTCAAAGGCCTCTCCC-CAGCAGTCCGCTAATCCAGG 133 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 || || || || | | ||| ||| |||| || || |||||||||||||| Sbjct 132 GCTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCACACGCTTCATGAAGAG 73 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCC 116803 || ||||||||||| || |||| | |||| Sbjct 72 ATCCGGGATCCAGAGGGCGTAGAACAAGTCCC 41 >seq182767 Length=2084 Score = 120 bits (132), Expect = 4e-22 Identities = 293/436 (67%), Gaps = 10/436 (2%) Strand=Plus/Minus Query 115573 CCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTT 115632 || || ||||| || ||||||| |||| | ||||| |||| | ||| | ||| Sbjct 1982 CCTGTTTTGAGTCCAAGCTTCCACCCATAGAAGTGCATGGAGGTGAGCTTTCC-ATAGTT 1924 Query 115633 GGACTTTCC-ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC-CGATCCG 115690 || || | | ||| | || | ||| ||| ||||| ||||| || ||| ||||| | Sbjct 1923 GGGCTGTGCGATGTGAATATTGAGACTCTGGCTCTGATCAATGAA-CGCCCCTCGATCTG 1865 Query 115691 CCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAA 115750 | ||||| | || | |||| ||| ||||| || || | ||||| ||| | Sbjct 1864 CAGCCATTTGAAGGATGGTCTTCTGTGAGATCTCCCAGACGGTCTTATAGAGCGCCTTGA 1805 Query 115751 TATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATC-- 115808 | ||||| || || ||| ||| ||| | || ||| || ||| | || | || Sbjct 1804 TGTCATCAGGAATTTCCGGGATCCCTTGAACGGATCCAT-TG--TTGGCAATTATATTTT 1748 Query 115809 -CTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGA 115867 |||||| |||| ||||||| ||| | | |||||||| | || || | || | Sbjct 1747 GCTTCATGTCCTCATCCCAGAGATCAAGTTCCGTGAGATCCCGGAGAAGATGATGGTTCA 1688 Query 115868 CAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAA 115927 | || ||||| || | |||| |||| |||||||||| ||||| | ||| | Sbjct 1687 CGACCTGGAACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGA 1628 Query 115928 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 115987 || ||| ||||| |||| |||||| || |||||||| ||||||||||| |||| ||||| Sbjct 1627 TGCCCTCGTTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCAAGAGAA 1568 Query 115988 GGCTGTTGCGGAGACC 116003 || ||||||||| || Sbjct 1567 GGGAGTTGCGGAGGCC 1552 >seq31316 Length=7037 Score = 86.0 bits (94), Expect = 8e-12 Identities = 293/450 (65%), Gaps = 20/450 (4%) Strand=Plus/Plus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || ||||||||||| |||| || || | ||||||||| ||||| | || | |||| | Sbjct 3269 CCCGTGCCAATACCGTCGGCACCATTGATGAGAACCATGGGAAGAATGGGGACATAGTAC 3328 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCC---AAATAGTTGAGCACGGGGTCATCCCTC 175864 || || || | | | || ||||||| | ||| ||||| ||| |||||| Sbjct 3329 TCCGGCTCCACCTT---CAAATTATCGTCCCGGAGATATTTGAGGACGTAGTCATCAT-- 3383 Query 175865 GGATCAAAGATTTTACGAGCATCCTTGGTGAGTT--TTGTG--AAGATGTACCTCGTTTG 175920 |||| | | | | ||| | || || || ||| | |||||||| | || | Sbjct 3384 GGATGTGATAAATAA--AGCGTGTGAGGGGACTTAATTGGGTAAAGATGTAACGCG---G 3438 Query 175921 AGACGCAT---CTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAG 175977 || |||| | || || || ||||| ||||| || || ||| |||| ||||| Sbjct 3439 GGAGGCATGATCCTTTCCGCCGGCCAGACGAGTCCCGAACTGTCCAATGGGCTGGAGGAG 3498 Query 175978 ATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGA 176037 ||| || ||||| ||||||| |||| | || | || | || ||| || |||||| Sbjct 3499 ATTAATGTTGTTGGAGCCCACGTAGTTTTGAGCTAGATTAATGATGGTACCCATGAGGGA 3558 Query 176038 GACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTT 176097 | | || ||||| || ||||| ||| | || | ||| | | || | || || || || Sbjct 3559 GGCCTCGCCGTGGTGATAGGCAGACATTTCTCCAACAGATCCAGCGAGTTGTGCAACTTT 3618 Query 176098 CATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTT 176157 | || |||| ||| | | | ||| | ||| |||||||||||| |||||| Sbjct 3619 GACTTCTCGCTTGTCGTTTCTCTTTAGGCAAGTGAACACGACCTTTCTCTGCCCAGGCTT 3678 Query 176158 GAGGCCGTCGGCCATGTGTGCGATGGAACG 176187 || |||||| | | | || |||||| || Sbjct 3679 GAAGCCGTCCACAAGGGATGGGATGGAGCG 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611293850074560