Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq28030 181 2e-40 seq182767 136 6e-27 seq182782 95.1 2e-14 >seq28030 Length=5412 Score = 181 bits (200), Expect = 2e-40 Identities = 506/765 (66%), Gaps = 15/765 (2%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| || ||||| ||||| || |||| ||| || |||||| || | || Sbjct 1264 CACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTTCCATAAAGTCAAA 1323 Query 159703 TGGGTTCTTCACG-TGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCA 159761 ||||| |||| | ||| ||| || | | || | | || | | || || | Sbjct 1324 GGGGTT-TTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGAGTCGATCCGCGA 1382 Query 159762 CAAATTCGATGTAGCTACAC-ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 |||||| |||||| || ||| || ||||| || || || |||| | ||||| || Sbjct 1383 CAAATTTGATGTA-CTGCACCATGGAATCACAATTCATTCCGAGCATTCGCACGGGAAGA 1441 Query 159821 GCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT 159880 || || | || ||||| |||| ||| | || || || || || | || || || Sbjct 1442 GCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATTTCCGTGATCCGC 1501 Query 159881 TCGTACCCCGGCTTGCC--CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 || ||||| | | |||| | |||| |||||| |||||||| || Sbjct 1502 TCCACAGAGGGCTTATTAGCGAGATGTC-----TGAACATGAGGCAGGCAAAGTCTGTGT 1556 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | || || ||||| ||||| |||| ||||| || | |||| || ||||||| |||| Sbjct 1557 GAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATGAGTCCAC 1616 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 || || ||||| ||||||| ||||| | ||| || || ||||| |||||||||| Sbjct 1617 GCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTTCCACGGCCG 1676 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCC 160118 |||| || | || | ||| ||||| || || ||| || |||||| ||| |||| Sbjct 1677 CAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCCACTTTTGAGCCC 1736 Query 160119 ATTCAGCCTTCTTTGCGAT-GCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 | ||||||||||| || ||| || | | || | ||||||||| | | ||| Sbjct 1737 AAGCAGCCTTCTTTTGAATAGCA-GGGAAGTTGTCCAGGGCGTTAAAGAGGCGACCCTTT 1795 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 |||| ||||||||| || |||| || ||||||||||| | ||| | ||| Sbjct 1796 TCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATTTCAGAGTGAATGTTT 1855 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGT 160296 |||||||| | ||||||| ||||| || || || ||| || || ||||| || Sbjct 1856 TCGATGGCGACCTGAAAGCCATAGAAGCATCGCG-CTTCAGTAACTTGGACCTCAGCGGT 1914 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 ||| | | | | || ||||||| | ||||| | || || || || || | || Sbjct 1915 GAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAAAAAGGCAAGGAC 1974 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCA 160401 ||||| ||||||| | ||| || | || || | || |||||| Sbjct 1975 ATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCA 2019 >seq182767 Length=2084 Score = 136 bits (150), Expect = 6e-27 Identities = 283/413 (69%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || |||||| || | ||||||||| | || || | |||||| | || |||||||| Sbjct 1965 CTTCCACCCATAGAAGTGCATGGAGGTGAGCTTTCCATAGTTGGGCTGTGCGATGTGAAT 1906 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 || ||| |||||| || || ||||| | | | |||||||| ||||| | | ||||| Sbjct 1905 ATTGAGACTCTGGCTCTGATCAATGAACGCCCCTCGATCTGCAGCCATTTGAAGGATGGT 1846 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTGAGGCACATCTT 204092 |||||| || |||||||| || ||||| | | || || || ||| | ||| | || Sbjct 1845 CTTCTGTGAGATCTCCCAGACGGTCTTATAGAGCGCCT-TGATGTCATCAGG---AATTT 1790 Query 204093 CCCACGTCC--TGATC-GAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCC 204149 || ||| ||| | || || |||| ||| || | | | || | ||||| ||| Sbjct 1789 CCGGGATCCCTTGAACGGATCCATTGTTGGCAATTATATTTTGCTTCATGTCCTCATCCC 1730 Query 204150 ACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCG 204208 | | | ||| | | || ||||| | || || |||| | || ||| || || || Sbjct 1729 AGA-GATCAAGTTCCGTGAGATCCCGGAGAAGATGATGGTTCACGACCTGGAACTCCCCA 1671 Query 204209 GACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCG 204268 || || || | ||||| | | | |||| |||| | | |||| |||||||||| || Sbjct 1670 GAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGATGCCCTCGTTGTTCCCC 1611 Query 204269 AAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCG 204321 | || || || ||| ||||||||||||||| |||| ||| ||||||||||| Sbjct 1610 AGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCAAGAGAAGGGAGTTGCG 1558 >seq182782 Length=571 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || |||||| || | ||||||||| | || || | |||||| | || |||||||| Sbjct 404 CTTCCACCCATAGAAGTGCATGGAGGTGAGCTTTCCATAGTTGGGCTGTGCGATGTGAAT 463 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| ||| |||||| || || || || | | | |||||||| ||||| | | ||||| Sbjct 464 GTTGAGACTCTGGCTCTGATCAATAAACGCCCCTCGATCTGCAGCCATTTGAAGGATGGT 523 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || |||||||| || ||||| Sbjct 524 CTTCTGTGAGATCTCCCAGACGGTCTT 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792286518584960