Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013692.1 Length=72544 Score E Sequences producing significant alignments: (Bits) Value seq121188 122 4e-23 >seq121188 Length=15723 Score = 122 bits (134), Expect = 4e-23 Identities = 348/530 (66%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 67748 TTCGCAGAGGTAGCGAAGTCAGTAGTGACGTAGAAGTTGTACCGCTTCTTGTTGTCCAGC 67807 |||| || || || |||||||| |||| |||||| || || ||||||||| | || Sbjct 721 TTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGG 780 Query 67808 ACGTTGCGACGCATGTACCAAGCCACCTCACCATCCTGGATGAGTCGGTCTTCGTCGGAC 67867 | || || | ||||| | | ||||| ||||| | | || || || | Sbjct 781 ATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCATCC 840 Query 67868 ATGATCTGGAGCATAAGCTCCTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGG 67927 ||| | |||||||||||||| ||||| ||| | || ||| | |||| | | Sbjct 841 TGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGCTTGAAGAAG 900 Query 67928 GTGTACTTCTGCAACACGAAGTCATAGGTGAAGCGGTCAGGCCATGCACCACGGAACTCT 67987 ||| | || || ||| ||||| || || || |||||||| |||| || Sbjct 901 TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCC 960 Query 67988 TCCCT-TGAGCAGGGGAACCGCTCACATACCGGGTAGACGTTGACCTTCCAAGCACCAGA 68046 | | | | | |||| ||| || ||| || || | ||||| |||| ||| |||||||| Sbjct 961 TTCTTATCAACAGGA-AACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGA 1019 Query 68047 CTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTGTACCCGACCAG-ATGATCA 68105 ||| | ||||| |||| || ||| || ||| || || ||| ||| || || Sbjct 1020 CTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGT-CCCATTCAGAATAGTCT 1078 Query 68106 TGTTCTTCTTCGGGTGCAGTGCATAGTCCACTGCCTTGTACACCGTGTCCTCAATGGCTG 68165 | ||| | ||||| || || | || | ||||||| || || || | ||| | Sbjct 1079 TTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAATCTTCG 1138 Query 68166 CGATGACAGTGGGCGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTACCGCAAGCT 68225 | || |||| || || |||||||| || || | ||||||||| || || |||||| Sbjct 1139 CCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCG 1198 Query 68226 GCGGACGTTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACCG 68275 || |||||||| | ||||| |||||||| ||||| |||||||||| Sbjct 1199 AAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231199881979880