Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq271769 113 5e-20 seq11950 109 6e-19 >seq271769 Length=1390 Score = 113 bits (124), Expect = 5e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || || ||||||||||| ||||| | Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | | ||||| ||| |||||| |||| | || Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCT 731 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| | ||||| || | |||||||| |||||||| || || || || | Sbjct 730 CGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 671 Query 46584 AGATTTGCAT 46593 |||||||||| Sbjct 670 AGATTTGCAT 661 >seq11950 Length=2906 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | || |||| || | ||| ||||||||| || || |||||||| Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| ||||| || | |||||||| || | || Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||||| ||||| || | | ||||| | || || Sbjct 767 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACT 708 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || || || || || ||||| ||||||||| Sbjct 707 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || | |||||| || ||| ||||| || |||||||| || Sbjct 1115 CCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGAC 1056 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || || |||||||| ||||| ||||| ||||||||||| | || Sbjct 1055 AAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 996 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||| |||| | | | | |||||| | || || Sbjct 995 ATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACC 936 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || || || |||||||||||||| |||||| Sbjct 935 TCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 1307 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAG 1248 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | | || |||||| |||||| |||||| | Sbjct 1247 ATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTT 1188 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | || ||||||||||| || || || || || Sbjct 1187 TCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACG 1128 Query 46583 AAGATTTGCATT 46594 || || |||||| Sbjct 1127 AAAATCTGCATT 1116 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||| ||||| || || || || ||||| |||| || Sbjct 641 ACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCT 582 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| || | |||||||| || | || | | ||||||||| Sbjct 581 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 522 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||||| | || || || | ||||| |||||| Sbjct 521 ATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTG 462 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || || |||||||||||| Sbjct 461 CCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563199189424320