Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq28030 298 5e-76 seq11950 145 8e-30 seq271769 120 3e-22 seq78081 96.9 3e-15 >seq28030 Length=5412 Score = 298 bits (330), Expect = 5e-76 Identities = 653/960 (68%), Gaps = 26/960 (3%) Strand=Plus/Plus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTT--GGCAA--ACATCACGCCAAATTT 132605 || ||||| ||||| || ||||| | ||| ||| ||| ||||||| || || Sbjct 1193 TAGAAGTCGGCATCTAACGTAAATTTA-CGTTCTTCGGGCTTTGACATCACACCGGCCTT 1251 Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 ||||||||| ||||| || |||||||| || || || ||||| |||| |||||| Sbjct 1252 TTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTTC 1311 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 |||||| || |||||||| | | |||||| ||||| || | || || || || || Sbjct 1312 CATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGAG 1371 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 | || || || || | |||||| ||| ||||| || ||||| | ||| |||| || Sbjct 1372 TCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCATTCG 1431 Query 132786 CACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844 ||| || || || || |||| ||| || | |||||| || || || || ||||||| Sbjct 1432 CACGGGAAGAGCCTCTGTGAGGAACTCGCT-CTCGATCGCAACGGCATCTCGAACGATTT 1490 Query 132845 CCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGT 132904 || | | ||| || | ||| | | | ||| ||||||| | ||| ||||||| Sbjct 1491 CCGTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGGCAAAGT 1550 Query 132905 CGCAATGCAAGCCC-TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 | || |||||| ||||| | |||||||||||||| ||| || | || |||||| Sbjct 1551 CTGTGTG-AAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATG 1609 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 || || || || || ||||| || |||| || || || || ||||| | || || Sbjct 1610 AGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTTCC 1669 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTTTGCTGGCGATCCAGCG 133082 |||||||| ||||| | | ||||| || || | || | | ||| |||| Sbjct 1670 ACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCG-TCCACTT 1728 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGA--CGCACGGCATCGTT-TCGATGGCGTTCAACAA 133139 | ||||| | ||||| | ||||| ||| || | ||| || | |||||| || | Sbjct 1729 TTGAGCCCAAGCAGCCTTCT-TTTGAATAGCAGGGAA--GTTGTCCAGGGCGTTAAAGA- 1784 Query 133140 ACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 || | || |||| | | | |||||||| ||||| || |||||||| Sbjct 1785 --GGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATTTC 1842 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||||| | ||| || ||||||| |||||||| || ||||| ||||| || || || Sbjct 1843 AGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTG 1902 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 || || | |||||||||||| | || || || ||||| ||||| || ||||| Sbjct 1903 GACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAA 1962 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTC 133373 |||||| || || || ||||||| ||||| | ||| |||| ||| ||||| || Sbjct 1963 AAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATC 2022 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 | || |||||| || |||||||| ||||| ||||| || || |||||||||| Sbjct 2023 TAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTTT 2082 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 |||||| |||| ||||| | ||||| ||||||| | ||||| || | ||||| || Sbjct 2083 GTACATGTTCCAGATGTCTGGGTATTGGATGGGAAGGACGACAAAGCGTTGTGGGTTCTC 2142 >seq11950 Length=2906 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || || || || || |||||||| | || || |||||| | Sbjct 660 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTC 719 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || || | ||||| |||||||||||| | || | Sbjct 720 AGACACCATTGAGAACG-TCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATC 778 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| ||||| ||||| || |||| |||||||| |||||| | Sbjct 779 AGCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATA 838 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| |||||||| | || || || ||||| ||| | |||||||| || Sbjct 839 ACATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGG 887 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || || |||||||| ||||| | || || |||||| | Sbjct 432 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 491 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || || | ||||| |||||||||||| | || | Sbjct 492 AGACACCATTGAGAACG-TCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATC 550 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| ||||| ||||| || |||| |||||||| || || | Sbjct 551 AGCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATA 610 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 | || ||||||||| | || || ||| | || || Sbjct 611 ATATTCAAAAGGAATCTACCCTTCATCTTGTCCT 644 Score = 123 bits (136), Expect = 2e-23 Identities = 161/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| ||||||||||| || | || || ||| | | Sbjct 1116 AATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATC 1175 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | ||| | | |||| || |||| |||||||| ||||||||| | || Sbjct 1176 TGACACTATTGAAAATG--TCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGAT 1233 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || || || || || || | ||||||||| ||||||| Sbjct 1234 CAGCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTAC 1293 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| |||||| | || || || ||||| |||||| Sbjct 1294 AACATCCAGAAGGAATCCACCCTTCACTTGGTCCTGCGT 1332 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || || || |||||||| | || || ||| | | Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATC 947 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||||| | | | ||| | | |||| || || | ||||| || ||||||||| | ||| Sbjct 948 CGACACCATTGAAAATG--TGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGAC 1005 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| ||||| || || || || | || ||| | |||||| Sbjct 1006 CAGCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTAC 1065 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| || | || ||||||| || || ||| | ||||| || Sbjct 1066 AACATTCAAAAAGAGTCCACTTTGCATTTAGTTCTTCGTCTCAGAGGTGG 1115 >seq271769 Length=1390 Score = 120 bits (132), Expect = 3e-22 Identities = 144/192 (75%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| ||||||||| | || || ||| || || Sbjct 661 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGCCCTCC 720 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| || || || ||||||||| | || | Sbjct 721 GATACCATCGAGAACG--TGAAGACCAAGATCCAGGATAAGGAAGGAATTCCCCCAGATC 778 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| ||||| || || | || |||||| |||||||| Sbjct 779 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTCTCCGACTACA 838 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 839 ACATCCAGAAGG 850 >seq78081 Length=4256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| |||||||| ||| |||| || ||| || | Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||| ||||||| || || |||||||| || | || ||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAA 3045 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || || | || ||||| ||||||||| Sbjct 3044 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGACTACAAC 2985 Query 38424 ATCCAAAA 38431 || ||||| Sbjct 2984 ATTCAAAA 2977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498368326589440