Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq209393 138 4e-27 seq78081 127 8e-24 seq11950 127 8e-24 seq46544 84.2 9e-11 >seq209393 Length=1576 Score = 138 bits (152), Expect = 4e-27 Identities = 464/713 (65%), Gaps = 16/713 (2%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| || || || ||| | ||||| || | || ||||| || || | || ||||||| Sbjct 523 AGCTATCGGGATCGATTTAGGAACGACTTACTCCTGTGTGGGAGTATTTCAGCATGGAAA 582 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 || ||||| || || || || ||||| ||||| || || || | || |||||| Sbjct 583 AGTGGAAATCATTGCCAACGATCAAGGGAATCGAACGACGCCGTCTTATGTCGCTTTTAC 642 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAA 451090 || | | ||||||| |||| | || || || ||||| || | ||| | | Sbjct 643 AGACACTGCAAGACTTATAGGAGATGCAGCCAAGAATCAA--GTTGCTCTGAATCCAAGT 700 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || || || | |||||| ||| | | |||||| | | | || || || || | Sbjct 701 AATACCGTCTTTGATGCCAAAAGACTGATTGGCAGACAATTCTACGACGAAACCGTTTCA 760 Query 451151 AAAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 | || ||||| ||| | |||| | || | || || ||||| | | Sbjct 761 CAGGACAAAAAGCATTGGCCATTCTAA----GTTGAGAACGTTGGGGGCAAGCCA-AGAA 815 Query 451207 TCAA-GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 |||| || | || ||| |||| || || | ||| | || |||||||| || | |||| Sbjct 816 TCAATGTCGAGTACAAATGTGAGACAAAGTCATTTACGCCAGAAGAAATCTCTGCCATGG 875 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || | ||||||||| |||| ||| | |||| | || | || | ||||| | Sbjct 876 TACTGAGTAAAATGAAGGAAATAGCTCAGGAATACCTCGGAACCGAGGTCAGAGATGCCG 935 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | | ||||||||||| || || || || | || ||||| ||||| || || || |||| Sbjct 936 TTGTCACTGTTCCCGCCTACTTTAACGACTCTCAGCGGCAGGCAACGAAGGACGCTGGAC 995 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 | || || || | || || ||||| || || ||||| || || || || || |||| | Sbjct 996 ACATAGCAGGGCTTAACGTACTTCGCATCATCAATGAGCCCACTGCGGCCGCAATAGCCT 1055 Query 451446 ATGGACTAG-GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 |||| || | || | ||| | ||| ||||| || || | | ||||| |||| Sbjct 1056 ATGGGCTCGACAAGAAAAAATGCTCCAG-AGAAAGCAACGTTCTCATTTTTGACCTTGGA 1114 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||| || ||| || || | ||||||||||| || || ||||| || || | Sbjct 1115 GGAGGGACATTCGATGTGTCCGTTTTGTCAATTGAAGACGGCGTTTTTGAGGTTAAATCC 1174 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA 451617 || ||| || || || || ||||||||||| |||| || | ||||||| Sbjct 1175 ACTGCTGGGGACACACACCTTGGAGGTGAAGACTTTGACAACAGACTTGTGGA 1227 >seq78081 Length=4256 Score = 127 bits (140), Expect = 8e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| || || || |||||||| ||||| || || ||||| | ||| Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | |||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAA 3045 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || || || || |||||| |||| | |||| || || Sbjct 3044 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGACTACAAC 2985 Query 391230 ATT 391232 ||| Sbjct 2984 ATT 2982 >seq11950 Length=2906 Score = 127 bits (140), Expect = 8e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || |||||||| || || || || || || |||||||| ||||| |||| Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATC 947 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||||| | | || || |||||||| |||||||||||||| || || || Sbjct 948 CGACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 1007 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || ||| | || || |||||||| ||||| |||| ||| |||| || || Sbjct 1008 GCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAA 1067 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | || | || ||||| Sbjct 1068 CATTCAAAAAGAGTCCACTTTGCATTTAGT 1097 Score = 118 bits (130), Expect = 4e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| ||||| ||||||||||| ||||| |||| Sbjct 1116 AATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATC 1175 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || || || || || || ||||||||||| || ||||| Sbjct 1176 TGACACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 1235 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || ||| | || || ||||| || ||||| | || | | || || || Sbjct 1236 GCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACAA 1295 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 1296 CATCCAGAAGGAATCCACCCTTCACTTGGT 1325 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| ||||| || || || || ||||| | || Sbjct 432 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 491 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | || || |||||||| ||||| |||||||| || ||||| Sbjct 492 AGACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 551 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | |||||| | || || || || || || || | || || | |||||||| Sbjct 552 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAA 611 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 |||| | ||||| | || ||||| Sbjct 612 TATTCAAAAGGAATCTACCCTTCA 635 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| ||||| || || || || ||||| | || Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | || || || || ||||| |||||||| || || ||||| Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | || || | || || |||||||||||||| | ||| | | ||||| || Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 384 CATTCAAAAGGAATCCACCCTTCA 407 Score = 89.7 bits (98), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 391074 ACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAA 391133 ||||| || || || ||||| || || || ||||||||| ||||| | | || Sbjct 1 ACTGGAAAGACCATCACTCTCGAGGTCGAGCCATCTGATACGATTGAGAATGTCAAGGCC 60 Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| ||||||||||| || || || || || ||| | || || | || ||| Sbjct 61 AAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAA 120 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCA 391252 ||||| |||||||| | ||| | | || || |||||| | ||||| | || ||||| Sbjct 121 CAACTGGAAGATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCA 179 >seq46544 Length=778 Score = 84.2 bits (92), Expect = 9e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || ||||| ||||| ||||| || ||| || | || | | || | | || Sbjct 372 GTCCTCACTAAGATGAAGGAAACTGCCGAAGGCTACCTGGGAACGTCCGTCAAGAACGCC 431 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || | || |||||||| || ||||| ||| |||| | || || || || ||||| ||| Sbjct 432 GTTGTCACCGTTCCCGCATACTTCAACGATTCACAGAGACAGGCCACCAAGGATGCCGGA 491 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || || | ||| | ||||| ||||| | || || ||||| || ||||||||||| || Sbjct 492 CAAATCTCGGGTCTTAATGTCCTTCGTGTCATCAACGAACCCACTGCAGCTGCTCTGGCC 551 Query 451445 TATGGA 451450 || ||| Sbjct 552 TACGGA 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1968412405746528