Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq209393 302 3e-76 seq209394 136 3e-26 seq281672 114 1e-19 seq46544 91.5 1e-12 seq275687 86.0 5e-11 seq56367 86.0 5e-11 >seq209393 Length=1576 Score = 302 bits (334), Expect = 3e-76 Identities = 688/1029 (67%), Gaps = 11/1029 (1%) Strand=Plus/Minus Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 || || || || |||| ||||||||||| | ||| | |||||| | ||||||||| Sbjct 1548 ACTTTGGGGATTCGAGTAGATCCTCCAACGAGTACTAGTTCATGAATGGCGGATTTATCC 1489 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810 | ||| | |||| ||| | || || ||||| |||||| | |||| || || ||| Sbjct 1488 ATTTTAGCATCCCTCAAAGCCTTCTCCACGGGCTCAAGAGTTCCCTTAAATAAATCCGAA 1429 Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 517870 || || ||||| ||| |||| || || | | || | | ||| | || || || ||| Sbjct 1428 CATAGCTCTTCAAATCTAGCCCTCGTGATACTGGTGTAGAAGTCAGTGCCCTCAAATAAA 1369 Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930 || |||| ||| || | | ||| | |||| || || | || || || || |||||| Sbjct 1368 GAGTCAATTTCGATACTCGCTTGGGCGGAAGCTGAGAGCGTTCGCTTGGCTCGCTCACAT 1309 Query 517931 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT-TATATTTT-C 517988 || || | |||||||||||| ||| | || ||| | |||| | ||| ||||| | Sbjct 1308 GCAGTTCGTAGTCTTCGTAAAGCTCTCGC--ATTCTTAGAAATGTCTTTGCCCATTTTCC 1251 Query 517989 TCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 | |||| || | ||| ||| | ||||| | || ||||| ||||||||||| | Sbjct 1250 TTCTGAATTC--GGATACAAAATGGTCCACAAGTCTGTTGTCAAAGTCTTCACCTCCAAG 1193 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | || | || | || | | | || | |||| || ||||||| ||||||| | Sbjct 1192 GTGTGTGTCCCCAGCAGTGGATTTAACCTCAAAAACGCCGTCTTCAATTGACAAAACGGA 1133 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT---GTCTTG 518163 ||||| || || || || | |||||||| || || || ||||| | | || Sbjct 1132 CACATCGAATGTCCCTCCTCCAAGGTCAAAAATGAGAACGTTGCTTTCTCTGGAGCATTT 1073 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || || || || ||||| || | || || ||||| || ||||| || || | | || Sbjct 1072 TTTCTTGTCGAGCCCATAGGCTATTGCGGCCGCAGTGGGCTCATTGATGATGCGAAGTAC 1013 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 ||||| || || || ||| || || || || || || | || || |||||||| || Sbjct 1012 GTTAAGCCCTGCTATGTGTCCAGCGTCCTTCGTTGCCTGCCGCTGAGAGTCGTTAAAGTA 953 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTG 518343 || |||||||| | ||||||||| | || || | || | || | || ||| Sbjct 952 GGCGGGAACAGTGACAACGGCATCTCTGACCTCGGTTCCGAGGTATTCCTGAGCTATTTC 893 Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT 518403 ||||||||||| | | ||| | || |||| |||||| | | || ||| | ||| Sbjct 892 CTTCATTTTACTCAGTACCATGGCAGAGATTTCTTCTGGCGTAAATGACTTTGTCTCACA 833 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 || || || | | ||| || ||||| || ||||| |||||||| | Sbjct 832 TTTGTACTCGACATTGATTCTTGGCTTGCCCCCAACGTTCTCAACTTAGAATGGCCAATG 773 Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 || | || | ||| ||| ||| | || | ||| ||||| | || ||| ||||| Sbjct 772 CTTTTTGTCCTGTGAAACGGTTTCGTCGTAGAATTGTCTGCCAATCAGTCTTTTGGCATC 713 Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 ||| | ||||| ||||||| | ||| |||||| |||||||||||||| || || Sbjct 712 AAAGACGGTATTACTTGGATTCAGAGCAACTTGATTCTTGGCTGCATCTCCTATAAGTCT 653 Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 | | || |||||||| | ||||| || || || || ||||| |||||||| || ||||| Sbjct 652 TGCAGTGTCTGTAAAAGCGACATAAGACGGCGTCGTTCGATTCCCTTGATCGTTGGCAAT 593 Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703 ||||| ||||| |||| || |||| || ||||| |||| ||||||||||| || Sbjct 592 GATTTCCACTTTTCCATGCTGAAATACTCCCACACAGGAGTAAGTCGTTCCTAAATCGAT 533 Query 518704 ACCAATAGC 518712 || ||||| Sbjct 532 CCCGATAGC 524 >seq209394 Length=1434 Score = 136 bits (150), Expect = 3e-26 Identities = 288/427 (67%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 517128 CTTTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTT 517187 |||||| ||| | || || | | | ||| | ||| ||| | |||| |||| |||| Sbjct 497 CTTTTTGCTTTTCGTCCTCTGCCTTATATTTATCAGCATCTTGGACCATTTTCTCTATTT 438 Query 517188 GATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTG 517247 || | |||| | ||| || ||| ||||| || || || | ||| || || Sbjct 437 CCTCCTTTGAGAGGCGTCCTTTATCATTGGTAATCGTGATTTTTTCTTCTTTACCTGATG 378 Query 517248 ATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAA 517307 | || || || ||| | ||||| ||||| || |||||||| | || || || ||||| | Sbjct 377 ACTTGTCTGCTGCACTGACATTTAGAATCCCGTTGGCATCAATGTCGAAAGTCACTTCGA 318 Query 517308 TTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTAT 517367 | ||||| || ||||| | || || ||||| || | || || |||| | || | || Sbjct 317 TCTGAGGCACTCCTCTAGGTGCCGGAGGGATTCCATTCAGATCAAATCTCCCTAAGCAAT 258 Query 517368 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 517427 ||||||||| || | || || || ||||| | || || || ||| ||| ||||| Sbjct 257 GATTATCTTTGGTCATGGGTCTCTCCCCTTCGAAGACCTGAATGGTCACTGCAGGTTGAT 198 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCA 517486 ||||||| ||||| || || ||| || | | ||| || || ||||||||||| | Sbjct 197 TATCTGAGTAAGTGGTGAAGACT-TGCTTCTGTTTTGTTGGGATCGTTGTGTTTCTCTTG 139 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 || | ||||| | || ||||| ||||| | || |||||||| |||| ||||| Sbjct 138 ATGAGTGAAGTCATGACGCCTCCTGCCGTTTCAATTCCGAGAGAAAGCGGAGCTACATCC 79 Query 517547 ACTAGGA 517553 | || || Sbjct 78 AGTAAGA 72 >seq281672 Length=1211 Score = 114 bits (126), Expect = 1e-19 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 366980 ATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATG 367039 |||||||| ||||| | || || || | |||||||||||||||||| ||||||| |||| Sbjct 644 ATAAAATACAAATTATGGTTGCTACTGTGGCATTTGGTATGGGTATTGATAAACCTGATG 585 Query 367040 TTAGAGTTGTTATTCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTG 367099 | || ||||| |||| || || || ||| | |||| ||||||||||||| || Sbjct 584 TGCGATTTGTTGCGCATTTTGATTTACCTAAAAATCTAGAAGCGTATTATCAAGAAACTG 525 Query 367100 GTAGAGCAGGTCGTGATGGAGAA 367122 || |||| |||||||||||| || Sbjct 524 GTCGAGCGGGTCGTGATGGACAA 502 >seq46544 Length=778 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || || | |||||| ||||| ||||| || || | | | ||||||||||| | Sbjct 556 CCGTAGGCCAGAGCAGCTGCAGTGGGTTCGTTGATGACACGAAGGACATTAAGACCCGAG 497 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| ||| ||||| || ||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 496 ATTTGTCCGGCATCCTTGGTGGCCTGTCTCTGTGAATCGTTGAAGTATGCGGGAACGGTG 437 Query 518297 ATAACGGC 518304 | |||||| Sbjct 436 ACAACGGC 429 >seq275687 Length=1446 Score = 86.0 bits (94), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| || ||||||||||| |||||||| |||| | || | | ||| || Sbjct 1384 CCGTATGCAAGGGCCGCAGCAGTTGGCTCATTAATGATTCGCTTCACTTCCAAACCTGCG 1325 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 |||| ||||| |||||||| || || | || || || |||||||| ||||| || || Sbjct 1324 ATTCGACCTGCGTCTTTAGTCGCCTGGCGCTGAGAGTCATTAAAATACGCAGGTACCGTG 1265 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTT 518352 || || || || || ||| | ||| | ||| | ||| || ||||| ||||| || Sbjct 1264 ATGACAGCTTCGGTCACTGTGTCACCCAGATA--CTCTTCAGCGGTTTGCTTCATCTT 1209 >seq56367 Length=19918 Score = 86.0 bits (94), Expect = 5e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 870789 CAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGAC 870848 || |||| || | || || ||||| ||||| || | || ||||| ||||| | || | Sbjct 13951 CACAGAACATAGTGGTGGACTATTCATCTCCTAACGTAGCCAAAGAGATGCACGTCGGGC 14010 Query 870849 ATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACG 870908 ||||||| ||||| || |||||||| || | | || |||| ||| || ||| ||| Sbjct 14011 ATTTAAGGTCAACCATCATTGGTGATGCTTGTGTTCGGCTATTGGAATGGTTTGGTCACA 14070 Query 870909 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAAT 870963 |||| | | |||||| | ||||||||||| || | ||| || ||| |||| Sbjct 14071 ATGTGATTAGACGAAATCATATCGGTGATTGGGGCACACCATTTGGCATGCTAAT 14125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3766500323378896