Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28030 136 5e-27 seq182767 102 1e-16 >seq28030 Length=5412 Score = 136 bits (150), Expect = 5e-27 Identities = 349/521 (67%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG-AAGAC--TCTAAAT 101873 ||||| | |||||||| |||||| |||||| |||||| |||| ||| ||| Sbjct 2061 TGGACGGTCGAAGAGGTGGATCTCAGCAAGGATACCCTAGATTGGGAAGAGCGTCTGAAT 2002 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || | |||||| | |||| || || || |||| || || ||||| Sbjct 2001 GACGAAGAGCGTTATTTCATATCTCATGTCCTTGCCTTTTTCGCTGCATCTGACGGAATC 1942 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCT 101993 ||| |||||| ||| | || | | |||||| ||| |||||||| ||| Sbjct 1941 GTTAATGAGAACATCGTCGAGCGTTTCACCGCTGAGGTCCAAGTTACTGAAGCGCGATGC 1882 Query 101994 TTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCAT 102052 ||||||| | ||| ||| || |||| | || || | ||| |||||| Sbjct 1881 TTCTATGGCTTTCAG-GTCGCCATCGAAAACATTCACTCTGAAATGTACTCATTACTCAT 1823 Query 102053 AGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGT 102112 |||| ||||| |||||| | || ||| | |||||| | ||| | | | | | Sbjct 1822 TGACACCTATATCAAGGATAAAGAGGAAAAGGGTCGCCTCTTTAACGCCCTGGACA-ACT 1764 Query 102113 TCCATG-TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 102171 ||| || |||||||||||| || | ||||||| |||||| | | | || || Sbjct 1763 TCCCTGCTATTCAAAAGAAGGCTGCTTGGGCTCAAAAGTGGACGCAGTCTACCTCTGCTT 1704 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||| |||||| || | || |||||| || || || || |||||||| || |||| Sbjct 1703 CCTTTGGAGAGCGAATCATAGCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCT 1644 Query 102232 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 | ||| | |||| ||||| |||||||| || |||||||| || ||| ||||| ||| Sbjct 1643 T-TGCTTCCATTTTCTGGCTGAAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAAC 1585 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || || || ||||||||||| || || ||| ||| ||||| Sbjct 1584 GAACTCATTTCTCGTGACGAAGGGCTTCACACAGACTTTGC 1544 >seq182767 Length=2084 Score = 102 bits (112), Expect = 1e-16 Identities = 365/562 (65%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 112764 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGG-TGCTTCAATTTGATAT 112822 ||||| ||||| |||| |||||| || | | |||||| | ||||| | ||| | Sbjct 1426 GGTCCCTATGAGACCTACTCGGGTTCCCCCG-TGAGCAAGGGCCTCCTTCAGTACGATCT 1484 Query 112823 GTGGGAAG--GTGA-GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAA 112879 ||||| | |||| | ||| || || ||||||| | | |||| |||| Sbjct 1485 CTGGGATGACGTGACGCCCACTGATCTCTGGGACTGGGGCAAGATTAAGGCCTCCATCGC 1544 Query 112880 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 |||| || || || ||| ||| | |||| || ||||| || |||||||| ||||| Sbjct 1545 CGAGAGTGGCCTCCGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACA 1604 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAAC 112999 |||| |||| || || || || | || ||||||| | |||||||| || | Sbjct 1605 AATCCTGGGGAACAACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGT 1664 Query 113000 CCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGG 113059 |||| | || ||||| | | || ||| | ||||| | || |||| || ||| Sbjct 1665 CCTCTCTGGGGAGTTCCAGGTCGTGAACCATCATCTTCTCCGGGATCTCACGGAACTTGA 1724 Query 113060 TCTCTGGTCCAAGGATATGAAGGA---TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 113116 ||||||| |||| |||||| | | | || | || ||| ||| ||||| Sbjct 1725 TCTCTGGGATGAGGACATGAAGCAAAATATAATTGCCAACAA---TGGATCCGTTCAAGG 1781 Query 113117 TATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGAT 113176 || ||| ||||| ||||| || ||| | | || || || ||||| ||| Sbjct 1782 GATCCCGGAAATTCCTGATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATCTCACA 1841 Query 113177 GAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTAT 113236 |||| || || | ||||| |||||||| || ||||||||||| || || ||| | Sbjct 1842 GAAGACCATCCTTCAAATGGCTGCAGATCGAGGGGCGTTCATTGATCAGAGCCAGAGTCT 1901 Query 113237 GAATCTATTCAT-GGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTT 113295 ||| | ||| | | || ||||| ||| |||||| | || |||||| | || | | Sbjct 1902 CAATATTCACATCGCACAGCCCAACTATG-GAAAGCTCACCTCCATGCACTTCTATGGGT 1960 Query 113296 GGAAGAAGGGTCTCAAAACGGG 113317 ||||| || |||||||| || Sbjct 1961 GGAAGCTTGGACTCAAAACAGG 1982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618502947643520