Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq182767 113 5e-20 seq218954 93.3 5e-14 >seq182767 Length=2084 Score = 113 bits (124), Expect = 5e-20 Identities = 231/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 109515 CTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTC 109574 |||||| ||||| || ||||| || ||||| | | ||| ||| || || || Sbjct 1890 CTGATCAATGAACGCCCCTCGATCTGCAGCCATTTGAAGGATGGTCTTCTGTGAGATCTC 1831 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 |||||| ||||| || | |||||| ||||| ||||| ||| ||| ||||| || Sbjct 1830 CCAGACGGTCTTATAGAGCGCCTTGATGTCATCAGGAATTTCCGGGATCCCTTGAACGGA 1771 Query 109635 GCCACCAGCCTTCACCATGAGATC---CTTCATCTCTTTCGACCAGAGACCGACCTTTTT 109691 ||| || | || | || |||||| || | ||||||| | | | | Sbjct 1770 TCCATTG---TTGGCAATTATATTTTGCTTCATGTCCTCATCCCAGAGATCAAGTTCCGT 1714 Query 109692 GAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 |||||| | |||||| | ||| || || || || |||| || |||||| Sbjct 1713 GAGATCCCGGAGAAGATGATGGTTCACGACCTGGAACTCCCCAGAGAGGACACGTCGGGA 1654 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||||| |||| | ||| ||||| || ||||||||||| ||||| Sbjct 1653 GTAGATGTTGGAGGTGTAGGCCTCGATGCCCTCGTTGTTCCCCAGGATTTGTGCCGTGGA 1594 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || ||||||||||| |||| |||||| ||| ||||| || Sbjct 1593 GGCCGTGGGCATGGGCGCCAAGAGAAGGGAGTTGCGGAGGCC 1552 >seq218954 Length=3338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 252/380 (66%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || |||||||| || | ||| |||||||| | |||||| | || | | ||| ||| Sbjct 1293 AACCCGTCCATCTCCGAGAGGAGCTGGTTCACCGTCTGGTTG-GCGTAGGGGTGGTAGGC 1235 Query 11653 ATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 | | | | | ||| | ||| |||| ||| ||||| |||||||||| | || Sbjct 1234 AGAGCTCGT-----ACGTGTGGAACCCACAGAGTCGATCTCGTCGATGAATATCACGCAA 1180 Query 11713 GGTTGGTTGGCACGTGCCTGTTCGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTAC 11771 || ||||| || ||| ||| | || || || | ||| || || ||| || Sbjct 1179 GGAGCCTTGGCTT-TGGCTGCAGCAAACAACTCCCGCACTCTCTTGGCGCCCTGACCCAC 1121 Query 11772 GAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC 11831 || || || |||| | | | ||||| | || | ||||| || ||| ||| || || Sbjct 1120 GAGCACTTCGTCGAACTCCGAGCCAGAAGAGTGGAAAAAGGGTACTGTAGCCTCCCCGGC 1061 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACG 11891 || || || || | |||||||| || ||||| || | ||| |||||||| || Sbjct 1060 GACTGCACGCGCCAAAAGAGTCTTTCCTGTACCCGGAGGGCCAACGAGAAGGCATCCCTT 1001 Query 11892 GGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATC 11949 ||| | ||| |||| | || ||| | ||| || |||||||||||||||||||| Sbjct 1000 GGGCAACTTCCCACCCAAATTGGAAA--ACTTCTCGGGGTTCTTGAGGAAGTCCACAATT 943 Query 11950 TCCTCAAGTTCCTCCTTGGC 11969 || | ||| |||| |||||| Sbjct 942 TCTTGAAGCTCCTGCTTGGC 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586851151284800