Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28030 122 1e-22 seq124498 89.7 6e-13 >seq28030 Length=5412 Score = 122 bits (134), Expect = 1e-22 Identities = 308/455 (68%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || ||| ||||||||||||||| ||||| ||||| ||| ||| |||||||| Sbjct 1255 ATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTTCCAT 1314 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGAC 117103 ||||||||| || || | || | || | |||| | | || | ||||| | Sbjct 1315 AAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTC-TACAAGGAGTC 1373 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 |||||| ||| | | ||||||| ||| ||| | ||||| |||| | | | Sbjct 1374 GATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCAT-TCGC 1432 Query 117164 ATGGGA-GTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222 | |||| | || || || |||| | |||| ||| |||| || ||| ||||| | Sbjct 1433 ACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATTTCC 1492 Query 117223 TGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGA-GCTCCACGGCAAACT 117280 ||| || || ||| ||||| || | |||| ||| | | || |||||| | Sbjct 1493 GTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCT-GAACATGAGGCA-GGCAAAGT 1550 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| || || || || || ||||| ||||| || ||||| || || ||||||| Sbjct 1551 CTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATGA 1610 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 | || |||||||||| ||| |||| | ||| || |||||||||||||| || || ||| Sbjct 1611 GTCCACGCTTCTTCAGCCAGAAAATGGAAGCA-AAGGACCCGGAGAAGAAAATCCCTTCC 1669 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || |||||| || | | ||||| | ||||| Sbjct 1670 ACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGA 1704 >seq124498 Length=1304 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||||| | |||||| || || | ||||| | ||||| || || | |||| ||| | Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 | |||| |||||| ||||||||||||||||| || ||||| |||||||| | || | Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTTGCG 251 Query 106626 ACTTGAGAATTGCCTTCCA 106644 ||| | || |||| ||| Sbjct 250 ACTCAATGATGGCCTCCCA 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587852326267840