Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq245840 134 2e-26 seq245841 127 2e-24 seq73487 95.1 1e-14 >seq245840 Length=2503 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||||| || | ||||||||||| |||| |||||||| || || |||||| Sbjct 1586 GATATTGCTGTTGGGTCTTCACAAAGGTTTGGCGTTCCAATGGGATACGGCGGCCCTCAT 1645 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 || || |||||||| |||| ||| | ||||| | |||| ||| ||||| | ||| Sbjct 1646 GCAGCGTTCTTTGCGACAAGAGATGAATATAAACGCTCTATACGAGGCCGAATTATTGGT 1705 Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926 ||| | ||| | || ||| ||||||| || | || || || || | ||||| Sbjct 1706 GTTTCAATCGATTCAAATGGAAATTCAGCATACCGAATGGCGCTGCAAACACGCGAGCAA 1765 Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCT 153983 ||||||| | |||||||| ||||||||||| || || ||||||| ||| || ||| Sbjct 1766 CATATCACACGCGACAAAGCTACCAGTAACATATGTACTGCTCAGGTACTACTTGCT 1822 >seq245841 Length=808 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 154875 ATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAG 154934 ||||| || ||||| || || ||||| || |||||| || |||||| | || || | Sbjct 93 ATGATAACGTACCCTTCAACGCATGGCGTGTTTGAATCTGCAATTAGAGAAATTTGCGAC 152 Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 | | ||||| ||||||| || |||||||||||||| ||||| || ||||| ||| Sbjct 153 GTGATACATGAACATGGTGGGCAAGTATATCTTGATGGTGCAAACCTGAATGCTTTGGTT 212 Query 154995 GGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACA 155054 || | | | | ||| | | |||||||||||| || || | ||||| || ||||| Sbjct 213 GGTATCGTACAGCCAGGGAAAATTGGTGCAGATGTTTGCCACATGAACTTGCACAAAACT 272 Query 155055 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || ||||| |||||||| ||||| || || || ||||| Sbjct 273 TTCTGCATACCTCATGGTGGTGGAGGCCCTGGGAGTGGCCCGATTGGTGT 322 >seq73487 Length=1470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 154869 TGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC-AGAT 154927 ||||||||| | || || ||||| || ||||||||||||| || ||| || | | || Sbjct 371 TGTATTATGGTGACTTATCCATCCACCAATGGTGTATTTGACAC-AACGATATCCGACAT 429 Query 154928 ATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGC 154987 ||||| | || ||||| ||||| || |||||||| | ||||| || || | ||||| Sbjct 430 CTGTAACCTTGTGCATGAGAATGGAGGCCAGGTATACTTGGATGGTGCCAACATGAATGC 489 Query 154988 ACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACA 155047 || || ||||| ||| | || |||||| | || || | ||| | || | || Sbjct 490 TCAAGTGGGACTCTGTCGCCCAGGGGATTATGGTTCTGACGTCTCACATTTGAATCTCCA 549 Query 155048 TAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 155086 || ||||| || || ||||| ||||| || || || || Sbjct 550 CAAGACATTTTGCATACCACACGGAGGGGGTGGACCAGG 588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577123173981440