Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq245840 131 2e-25 seq245841 122 1e-22 seq73487 122 1e-22 seq137257 100 3e-16 >seq245840 Length=2503 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||||| || | ||||||||||| |||| ||||||||||| || |||||| Sbjct 1586 GATATTGCTGTTGGGTCTTCACAAAGGTTTGGCGTTCCAATGGGATACGGCGGCCCTCAT 1645 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 || || |||||||| |||| ||| | ||||| | |||| ||| ||||| | ||| Sbjct 1646 GCAGCGTTCTTTGCGACAAGAGATGAATATAAACGCTCTATACGAGGCCGAATTATTGGT 1705 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 ||| | ||| | || ||| ||||||| || | || || || || | ||||| Sbjct 1706 GTTTCAATCGATTCAAATGGAAATTCAGCATACCGAATGGCGCTGCAAACACGCGAGCAA 1765 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658 ||||||| | | |||||||| ||||||||||| || || || || | ||| || ||| Sbjct 1766 CATATCACACGCGACAAAGCTACCAGTAACATATGTACTGCTCAGGTACTACTTGCT 1822 >seq245841 Length=808 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 ||||| || || || || || ||||| || |||||| | || ||| | || || | Sbjct 93 ATGATAACGTACCCTTCAACGCATGGCGTGTTTGAATCTGCAATTAGAGAAATTTGCGAC 152 Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 | | ||||| ||||||| || |||||||||||||||||||| || ||||| ||| Sbjct 153 GTGATACATGAACATGGTGGGCAAGTATATCTTGATGGTGCAAACCTGAATGCTTTGGTT 212 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACA 159729 ||| | | | | ||| | | |||||||||||| || || | ||||| || || || Sbjct 213 GGTATCGTACAGCCAGGGAAAATTGGTGCAGATGTTTGCCACATGAACTTGCACAAAACT 272 Query 159730 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || ||||| |||||||| ||||| || || |||||||| Sbjct 273 TTCTGCATACCTCATGGTGGTGGAGGCCCTGGGAGTGGCCCGATTGGTGT 322 >seq73487 Length=1470 Score = 122 bits (134), Expect = 1e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 159544 TGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAA--ACATCAGACAGA 159601 ||||||||| | || |||||||| || ||||||||||||| |||| | ||| ||| | Sbjct 371 TGTATTATGGTGACTTATCCATCCACCAATGGTGTATTTGACACAACGATATCCGAC--A 428 Query 159602 TATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATG 159661 | ||||| |||| ||||||||||| || |||||||| | |||||||| || | |||| Sbjct 429 TCTGTAACCTTGTGCATGAGAATGGAGGCCAGGTATACTTGGATGGTGCCAACATGAATG 488 Query 159662 CACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721 | || || || || ||| | || |||||| | || || | ||| | || | | Sbjct 489 CTCAAGTGGGACTCTGTCGCCCAGGGGATTATGGTTCTGACGTCTCACATTTGAATCTCC 548 Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 159761 | |||||||| || || ||||| ||||| || || || || Sbjct 549 ACAAGACATTTTGCATACCACACGGAGGGGGTGGACCAGG 588 >seq137257 Length=516 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 |||||||| ||||||||||| |||||||| ||||| || | ||||| | ||| | Sbjct 444 ATGATTACCTATCCATCTACGCATGGTGTGTTTGAGCGAACGGTTCGACAGGTCTGTGAT 385 Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 || ||||| |||||||| || || ||| | || || || ||| | ||||| ||| Sbjct 384 ATCACCCATGAAAATGGTGGGCAAGTTTATATCGACGGCGCGAATATGAATGCGATGGTT 325 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACA 159729 || | || || | || || | ||||| | ||||| ||| | ||||| || Sbjct 324 GGGTTGGCTCGCCCTGGCGATGTCGGCGGCGATGTTAGCCATCTGAACCTGCATAAAACC 265 Query 159730 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| || ||||| || || ||||||||| | || || ||||| || Sbjct 264 TTTTGTATCCCGCATGGCGGCGGTGGTCCTGGCATGGGCCCCATTGGCGT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585929687685760