Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015293.1 Length=30651 Score E Sequences producing significant alignments: (Bits) Value seq16683 86.0 1e-12 >seq16683 Length=10350 Score = 86.0 bits (94), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 2030 ACCTTGTTGGTCAGTCCATTTGCGGGTTTTTA-ACTTGCCTTCAATGTATAGCTTACTAC 2088 |||||||||||| |||||||| ||| | |||| ||||| | ||| | | || | Sbjct 252 ACCTTGTTGGTCTGTCCATTTATCGGTACGAATACTT-CCTTCTACGTAAACTTGGCTTC 310 Query 2089 CCTTACGTACATACTCGCCGATTATTTCAGCTAACTTTCCAAAAACAACAATTCTGTGCC 2148 | || || || | || || |||||||||||||| ||||| | | || | |||| Sbjct 311 CTTTTTTTAAGTATTGCCCCATGATTTCAGCTAACTTACCAAAGGCTTCTATACGATGCC 370 Query 2149 ACTCGGTTTCTTCTTTTGGCTCGCCAGTGCTTTTATCCTTCCATTTTTCGCTAGTTGCTA 2208 |||| || |||| || | |||||| |||| || |||||| |||| |||||||| | Sbjct 371 ACTCTGTACGCTCTTGGGGTTGTCCAGTGTTTTTGTCATTCCATGTTTCACTAGTTGCAA 430 Query 2209 GAGTTAGGTTTGCCACTGCATTTCCGTTAGGTATGTAACGAATTTCTGGAT 2259 || || | || ||| | || || || || ||||| ||||||||| Sbjct 431 CAGATATAGAGGTAACGGCAGTGCCATTGGGCATATAACGTGTTTCTGGAT 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97625854738896