Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq11950 159 8e-34 seq78081 113 1e-19 >seq11950 Length=2906 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| ||| | ||||||||| ||||| |||||||| || || |||| || || Sbjct 882 TCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGACAGGGT 823 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || || |||||||| || ||||| || || || || || ||||| ||||| || Sbjct 822 GCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCC 763 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||||||||| || ||||||||||||||||||||| || || |||||||| Sbjct 762 CTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAG 703 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||| || | || || || || | ||||||| Sbjct 702 AGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || || | ||| || ||||| ||||| || |||||||| |||||||||| ||||| | Sbjct 422 AGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGG 363 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| || || ||||| ||||| || || |||||| Sbjct 362 CCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCT 303 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||||||||||||||||||||| || || || || || || Sbjct 302 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTG 243 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||| || ||||| | ||||||| Sbjct 242 ATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 145 bits (160), Expect = 2e-29 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | | ||| | || | |||||||||||||||||| ||||| || | |||| | Sbjct 1110 TCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGACAAG-G 1052 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 ||| ||||| || || ||||| || |||||||| | || || |||||||| ||||| | Sbjct 1051 TTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTC 992 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| || ||| || || ||||||||||| || || || |||| Sbjct 991 CTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACCTCAA 932 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || | ||||| || || | |||||| || || | |||||| Sbjct 931 GAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| || | ||||| ||||| || || || ||||||||||| ||||| | || || Sbjct 654 TCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGT 595 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || || |||||||| || ||||| || || || || || ||||| ||||| || Sbjct 594 GCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCC 535 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||||||||| || ||||||||||||||||||||| || || || || || Sbjct 534 CTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAG 475 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || || | ||| || ||||| | ||||||| Sbjct 474 TGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || || || ||||||||||| |||| |||||| | |||||||| Sbjct 185 ACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCATCTTCC 126 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || |||||||| || || |||||||| || || ||||| |||||||| Sbjct 125 AGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 66 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||| || || || || || || || || | |||||| Sbjct 65 ATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGAGTGATGGTCTTT 6 Query 195112 CCTGT 195116 || || Sbjct 5 CCAGT 1 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| || || || || ||||| |||| || || | ||||| ||||| || Sbjct 1320 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGTTG 1261 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| ||||| ||||||||||| || || || Sbjct 1260 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTT 1201 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||| ||||| || || || ||||| |||| || || || || Sbjct 1200 GGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGT 1141 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 1140 GAGGGTCTTGACGAAAATCTGCATT 1116 >seq78081 Length=4256 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||| ||||| || | ||| |||| ||||| ||||||||||| || || |||| Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | || ||||| |||||||| || || || || ||||| ||||| ||| || || | Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | ||||| || || || || || ||||||| || || || || | || || |||| Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 3155 AAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105378856312472