Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11950 125 5e-24 seq78081 123 2e-23 >seq11950 Length=2906 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| |||| ||||||||||| || || || |||||||||||||| | Sbjct 889 TTCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGG 830 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | || | || || ||||| || || || || || || || ||||| ||| | | Sbjct 829 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 770 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| |||||| |||||| | || | || |||||||| Sbjct 769 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 710 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 709 CTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCAT 661 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| ||||| || || ||| | || | || || ||||| || || || || Sbjct 624 TTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAA 565 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | ||||||||||| |||||| |||||| Sbjct 564 AATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTT 505 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || ||||||||| || | || || ||||| || || |||||||| || Sbjct 504 CTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGAC 445 Query 34970 AAAGATCTGCAT 34981 ||||| ||||| Sbjct 444 GAAGATTTGCAT 433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||| |||||||| | | |||| |||| || || || || || || || Sbjct 1079 TCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAG 1020 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | || |||||||| |||||| || || | Sbjct 1019 ATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTT 960 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| || || || ||||| || ||| Sbjct 959 TCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACA 900 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 899 AAGATCTGCAT 889 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||| | ||| | |||| ||| ||| || |||||||| || || | Sbjct 433 TTCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGG 374 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | || |||| || || || ||||||||||| || || || || || ||| | | Sbjct 373 AGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGG 314 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||||| |||||| | || | || |||||||| Sbjct 313 GGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 254 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || |||||||| || ||||| ||||| Sbjct 253 CCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 205 >seq78081 Length=4256 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| |||||||| |||||||||||| ||||| |||| || ||||| ||||||||||| | Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | || || || ||| | || | |||||||| || || || || || | Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| || |||||| |||| ||| |||||||| |||||||| ||||| || | Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 34972 AGATCTGCATA 34982 | ||||||||| Sbjct 3155 AAATCTGCATA 3165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323491698877248