Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015933.1 Length=72917 Score E Sequences producing significant alignments: (Bits) Value seq121188 302 2e-77 seq76541 131 8e-26 seq266624 91.5 7e-14 seq121189 91.5 7e-14 seq282581 87.8 8e-13 >seq121188 Length=15723 Score = 302 bits (334), Expect = 2e-77 Identities = 844/1274 (66%), Gaps = 35/1274 (3%) Strand=Plus/Plus Query 67890 CAGCATGGAGATAGTATCAATACAGTCATCCTTACCTTTAATCCCATTAATGGTAGCTAG 67949 || ||| ||||| ||||| | ||||||||||||||||| | |||| ||||||| | Sbjct 273 CAACATAGAGATGGTATCGAGGCAGTCATCCTTACCTTTCAAACCATCTTTGGTAGCCAA 332 Query 67950 TTTAATCTGGCCCATGAAAAGACCCATAATAGTTGTATCTCTCAACTCTTCCGGGAAGTA 68009 ||||| ||||||| | |||| || |||||| ||| ||| ||||| | Sbjct 333 AGAGATCTGTTCCATGAACAAGCCCAGAACTTGAGTATCTTTCATCTCCAAGGGGAACTT 392 Query 68010 CATCTTACCAGCTTTGAACCATGGAACTACCAGGTTAAAACGTGACAGTTTAGAGGTTAC 68069 ||||| ||||| || || ||||| ||||| ||||| | ||||||| || | Sbjct 393 GATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTATCTGTCAT 452 Query 68070 AGGACGGATGCCTGGCTTACCACCCTCAGAAGATGCAAAGTTAAAGAAGACATTACGGTT 68129 || ||||| || || ||||| | || | | |||| ||| ||| | | | | |||| Sbjct 453 GGGTCGGATACCCGGTTTACC--CTTCTGCTGG-GCAAGGTTGAAGTAAATACTCCGGTA 509 Query 68130 AATCATTTCTTTC-TGAAGGAGTGATATGAATCCACCTTGCTGTCCTGTAATTTCGACAC 68188 | |||||| | ||| | || || || ||||| ||||| || ||||| || |||| Sbjct 510 ATCCATTTCACGCATGATCCATTGG-ATAAACCCACCCTGCTGACCAGTAATCTCAACAC 568 Query 68189 CAACGTTTTGTGGTTGGTATTCCTGAACCAGACGGAACAAGTCGTCAAAGTTTTTATCCA 68248 | ||| | ||||| | ||| |||| ||||| ||| ||||| ||||| | |||||| Sbjct 569 CGACGCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGATTGAGGTATCCA 628 Query 68249 TAAGCTGACGATTAGCCACACCGTCAACCCAGAACCAATCTCCATTAGAACTGTAAGCCC 68308 | ||| ||| | ||||||||||||||| |||||| ||||| || || |||| Sbjct 629 TTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGCCC 688 Query 68309 AAACTGATATGACGCTGTAGTCACTGGTCTGTTTCTCCGAAGTAGCAAAGTCTGTTGTAA 68368 | |||||| ||| || || || |||||| ||| || |||||||| || || | Sbjct 689 ATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGA 748 Query 68369 TGTAATAGTTGTAGCAGGACTTCATCCTTAACAGTTGTTGCCTGCTGTACCACTTAATCT 68428 |||| | || || ||| || | | |||| || | |||| || | Sbjct 749 TGTAGAACTTATAATCCTTCTTGTTCGCAAGGATGTGTTTCCGTTGGAACCAACCGATGT 808 Query 68429 CACTATCCTGAACAAGACG---TTCATCTTCAGAACT-AATACGAAGCATAAGTTCCTGG 68484 ||| |||||||| | ||| ||||| || || ||| ||||||||||| ||||| Sbjct 809 CACCTTCCTGAACCAAACGAGACTCATCATC----CTGAATCCGAAGCATAAGCTCCTGA 864 Query 68485 TAGAAACCAGCCAGCTTACCGGTCTTAACTG-CCATATCGTATTGGGCTTTGATATAGTC 68543 ||| | || ||||| | || || | ||||| | |||| | | ||| Sbjct 865 CGGAACGACTCAAGTTTACC-TTGTTGCTTGAAGAAGTCGTAATCCTCTTTCAACTGGTC 923 Query 68544 ATACGAGAAACGGTCATCCCATGCACCCT-GAAACTCTTCTCTACTACATGGGAACTTCT 68602 || | ||||| || |||||| | |||| ||||| | ||| || |||| || Sbjct 924 GTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACA-GGAAACTCCT 982 Query 68603 CGCACACAGGCCATACGTTGACATCCCATGCACCGGACTCAACTGCTTCAATGATGATGT 68662 ||||| ||||| ||||| || ||||||||||| ||||| | ||||| | | ||||| Sbjct 983 TACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTTGATACACGATGT 1042 Query 68663 CTTCCTTATTAAAGGGAGTACCATTGAAGATTACTTTACGGCGTGT-TGGGTCAAGAGCA 68721 | | ||| | |||||||| ||||| ||| || | | | | | | ||||| |||||| Sbjct 1043 CGTTCTTGTCGAAGGGAGTCCCATT-CAGAATAGTCTTTGACTTTTGTGGGTGAAGAGCG 1101 Query 68722 TGGTTCACACCTTTATAGACAGTATCCTTAATAGCTT--CCATGCTTGTCTTAGAGTTAG 68779 |||| | ||| || || |||||||| ||||| ||| |||| || ||| || | Sbjct 1102 TGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCATCGCAGTTGGAGACTTCG 1159 Query 68780 CATCACCATCACTAATCAAGTCATCCAGTAC-GCATAGTGTCGGACGTTTACCATATATC 68838 |||| |||| ||||||||||| || || ||| || | || ||||||||| | ||| Sbjct 1160 CATCTTCATCTGAGATCAAGTCATCGAGAACTGCA-AGCGAAGGTCGTTTACCAAAGATC 1218 Query 68839 TTCGTACCACGAAGACCTGTCTTAGCACCAAATAACTTAACACCCAGACGATGACCTTCT 68898 ||||||||||| | ||| | ||| ||||| || | ||| ||| || || || Sbjct 1219 TTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACA-CCAAACTTATTCCNNCT 1277 Query 68899 GCATTACGGAACTCTAACAGGTTATCTGT------AAAAATAGCTTCGGGTATCCACTGC 68952 | || |||||| | ||| ||||| || |||||| || ||||| ||| Sbjct 1278 ACGTT---GAACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTTCTGGCATCCAGTGC 1334 Query 68953 TGAAGGAACTCACTATTCTTGTATCGGAACTCAATGTTCTTACGTGCAGACTTAGCACCG 69012 || || ||||| | | || || | || || ||| || ||||| |||| Sbjct 1335 TGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAGCGGACTTCACACCA 1394 Query 69013 TTATCCATTGAGTCAGATACGTAAATCATTCCTTCTACTTTACCAAGACTTGGTAAATGC 69072 || ||||| ||||| || | || | ||| | || ||||| |||| || || | ||| Sbjct 1395 TTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTCCCAAAACCGGGAAGATGA 1454 Query 69073 CCAAACACTGCCAAGAACAAAGTAAAGTATTCCATGAACACAGCAGTCTTACCTGCACCA 69132 |||| |||| |||| || | |||||| | ||||| || || || | | |||| Sbjct 1455 TTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTGGTTTTCGCAGAACCA 1514 Query 69133 CGGAAACACAGGTT 69146 ||||||||||| || Sbjct 1515 CGGAAACACAGATT 1528 Score = 89.7 bits (98), Expect = 2e-13 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 7688 GTACATGACTGCTTCCGTTGTCATCCTAACTACGGTAATGATCTGCGTCGTCAGTACAAT 7747 ||||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| Sbjct 14198 GTACATGACTGCTTCCGCTGTCACCCGAACTATGGCAATGATCTGCGTCGTCAGTACAA- 14256 Query 7748 CAGATTC-TGTCTGACAT 7764 || | || || ||||||| Sbjct 14257 CACAATCATGGCTGACAT 14274 >seq76541 Length=11138 Score = 131 bits (144), Expect = 8e-26 Identities = 304/450 (68%), Gaps = 9/450 (2%) Strand=Plus/Minus Query 24390 TTCATTAAGTACACCCAACGGCAGATG---TATCACAACATTAGCTATGACGTGTACATA 24446 ||| || || || |||||| | |||| ||||||||||| |||||||||| || | Sbjct 740 TTCTTTGAGAACTTCCAACGTCGGATGATCTATCACAACATCTGCTATGACGTTTATGTG 681 Query 24447 CTTATCTATCAGTTATTCATGGATAACCTGATTGATACGGAAGGCTTACTACATGGCATG 24506 || || |||||||| || |||||| || | |||| || || | || | || || Sbjct 680 CTGATTTATCAGTTGTTTATGGATCACATCCTTGACCAAGAGGGAATGCTCGAAGGTCTG 621 Query 24507 GAAATCATGCTACGTAACTGGGACTGTACTAAGTTAATCACCTACCTGGCTACTAACAGT 24566 ||| || | ||||| |||||||| ||||| || | ||||| || ||||| || || Sbjct 620 GAAGTCCTCCTACGCAACTGGGAATGTACACAGCTCATCACGTATCTGGCCACCAATTCA 561 Query 24567 TGTGCCGGTAATCACCTTAGTCTGAAAGACCAGGCTCAGGAGTATGCTGGTAACTATGCT 24626 ||||| ||||| | | ||||||| | ||||||||||||| || || ||||||||| Sbjct 560 TGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCT 501 Query 24627 CAGGATGATATTAAAGACAT-ACGTCTTATTCCTAATGAGCAA-CTGTTACGCTACAACC 24684 || || || | ||||| ||| | || ||| || || || || ||||||| Sbjct 500 GTTGAAGACATCCATGACATCACG-CAGATCCCT-CTGCCAAAGCTCTTGGAATACAACC 443 Query 24685 TCATTGATGGTTTGTGTACGTGGTACACCTACGAGAAGCACTGGGATACTCTCATTGCTG 24744 || | ||||| | | ||| ||||| |||| | || || || | | || | Sbjct 442 TCGTGGATGGCCTATCTACTTGGTATGTCTACAATAAACATCATTCCACGATGGTCGCAG 383 Query 24745 ATGACCAACTAGATGTTTACAACAACATCTTTAAACCAGCCTGTGA-AGACATTATTCAG 24803 | || || | | | ||| | | || ||| || |||||| ||||| ||||| Sbjct 382 ACGATCAGGAATACATCTACGTTGAGCTGTTCAAA-AAGGCTGTGATCGACATCATTCAA 324 Query 24804 ATGCAGTTAACCGGTATGCCCATGAATATG 24833 |||||||| || ||||||||||| || ||| Sbjct 323 ATGCAGTTGACGGGTATGCCCATCAACATG 294 >seq266624 Length=731 Score = 91.5 bits (100), Expect = 7e-14 Identities = 179/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 57763 ATCTCTACATACTGCTCGTTAGTAATACGTACTACTTCTTTCTCAGATAAAAACACAGCA 57822 || || ||| ||| ||||| || ||| || ||||| | ||| || ||| |||| Sbjct 320 ATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCA 379 Query 57823 TTCATTGCACAAATCTTAGTACCAAT-GTCTGCCATACCCTTAGCTAATCGACGAAGGAT 57881 |||||||| ||||| ||| || |||| |||||| || || | ||||||| || Sbjct 380 TTCATTGCGATGATCTTCTCACCGATCTTCTG-CATACCTTTGGCCAGACGACGAACAAT 438 Query 57882 TGCCATCTCACGTTTGGATGCTGCATCAAGTGCACCACGAATACCGGCAGCCACTTCTCC 57941 |||||| || |||| | || || ||||| || ||||| | || || || Sbjct 439 GCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACC 498 Query 57942 GTAAGCTGAACCAGTTACACCACCGGAGAATGCTTTAACACCAGTTAGTGATTCAGCTTC 58001 || || ||||| | |||||||||||||| ||| || || || |||| ||| ||||| Sbjct 499 ATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTC 558 Query 58002 CTGGTTTTGCATCTGGGTCATT 58023 ||||| || | |||| || || Sbjct 559 TTGGTTCTGGAGCTGGATCGTT 580 >seq121189 Length=2370 Score = 91.5 bits (100), Expect = 7e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 12787 GCTTCAGCAATTGAGAAGTTCAACATGTCA--CCCTCGTGTGTAGCTATCGTTCACGATA 12844 ||||| || ||||| ||||||||||| || || || || | | | |||||||| | Sbjct 1748 GCTTCGGCCATTGAAGAGTTCAACATGCCAGTAGATC-TG-GTTGGTGTTGTTCACGACA 1805 Query 12845 AGTCCACATGGGCAAGACGTGCATTATCTGTGTTCAATACCGTAATAGAACCAGGATGGA 12904 | ||||| ||||| ||||||| | ||| ||||| || || || ||||| || |||| Sbjct 1806 AATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGAACCGGGTTGGA 1865 Query 12905 AAGGGTATCTTACCCTTGAACTGGTCTATCACGGTCGTAAGAAACTGCATATCCCGGCTG 12964 |||| || | || | || || || ||||||||| | || | |||||||| | | Sbjct 1866 AAGGTCATTTAACATTAGAGCTTGTTTATCACGGTAGCGAGGGTATACATATCCCATCAG 1925 Query 12965 GTGCTGGGATAGCTCAAGTATTATTTCA 12992 | ||| || |||||||| ||||||| Sbjct 1926 GATGTGGAATTGCTCAAGTGCTATTTCA 1953 >seq282581 Length=1216 Score = 87.8 bits (96), Expect = 8e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 28969 CCATTCACATTCGACTCTGGTACAGCACCTGCTGTAAAACAGCTTCGTCACAAGCTGCTT 29028 || |||| |||||||| || || | |||||||| || |||||||| ||||||| || Sbjct 704 CCGTTCATCTTCGACTCAGGAACCGGGCCTGCTGTGAAGCAGCTTCGATACAAGCTCCTG 645 Query 29029 ATGGCTGGTTGTGGTGCTATTAACTTACAGATTGATGAGATTGGTTCCAACCTCATTGCC 29088 |||| |||| | || ||||| ||||| |||||||| ||||||||||| | | Sbjct 644 TTGGCCAAGAATGGTTCGATCAACTTCCAGATGGATGAGATCGGTTCCAACCTTCAAGGC 585 Query 29089 AACGTTGAAGTTCTTAAC 29106 ||| |||||| || ||| Sbjct 584 AACACTGAAGTGCTCAAC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232389283482928