Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq28030 176 5e-39 seq285389 125 8e-24 seq244135 98.7 1e-15 >seq28030 Length=5412 Score = 176 bits (194), Expect = 5e-39 Identities = 580/887 (65%), Gaps = 41/887 (5%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||||||||| | ||| | || |||||||| || || ||||| || | || ||| | Sbjct 1250 TTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTT 1309 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||| || |||| ||| || || || | | | | |||| || Sbjct 1310 TCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGG 1369 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCAT---ATCACAATTCATTCCTATT 18846 |||| |||||| |||||||| || || | || ||| ||||||||||||||| | Sbjct 1370 AGTCGATCCGCGACAAATTTGATGTAC---TGCACCATGGAATCACAATTCATTCCGAGC 1426 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT-----G 18901 | | || || || || ||||| || || || || || || || ||| | Sbjct 1427 ATTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACG 1486 Query 18902 ATATAATAGATACAACTCTATCTTCATTAGGAGGG--TAT-AGA-AGATGTTTAAACATC 18957 || | ||| | ||| | || ||||| ||| || |||||| | ||||| Sbjct 1487 ATTTCCGTGATCCG-CTCCA----CA----GAGGGCTTATTAGCGAGATGTCTGAACATG 1537 Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 | || ||||| || || || || ||||| | | || | ||| ||||| || || Sbjct 1538 AGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTG 1597 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 | |||||||| ||||| | || || | |||||| || |||||||| || || || ||| Sbjct 1598 AGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAG 1657 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 || || ||||| || || |||||||| | | || |||||| | |||| || Sbjct 1658 AAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGAC 1717 Query 19138 TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA-CATGGCATTGTCTCTATAGA 19196 || |||| || | |||||| |||||||||||| | | || || | | | || | | Sbjct 1718 TGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGT-TGTCCAGGGC 1776 Query 19197 ATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 ||||| | || | | || ||| |||| || | ||| | || || | ||| Sbjct 1777 GTTAAAGAGGCGACCCTT---TTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGA 1833 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||||||||| || ||||| ||||| || || | |||||| || || || |||| ||||| Sbjct 1834 GTACATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTC 1893 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | || || ||| || | ||||| | || |||||||| ||||| ||| Sbjct 1894 AGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGA 1953 Query 19374 AGCTGCAAAAAATGCTAATACATG---TTTAATAAAATGTTTTTCATC--TGAGGTTAAT 19428 || || ||||| || | ||||| | | | | || | | ||| || | || | Sbjct 1954 TGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAG---ACG 2010 Query 19429 GTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGC 19487 | || |||||| |||| || | ||| || ||||| || ||||| || || Sbjct 2011 CTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGC 2070 Query 19488 CTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAA 19534 | |||||||| ||||||||||| || || | ||||| || |||| Sbjct 2071 AACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAA 2117 >seq285389 Length=790 Score = 125 bits (138), Expect = 8e-24 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 18660 TACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA 18719 |||||| |||||| ||||| | ||||| |||||||||||||| ||||| || | | Sbjct 578 TACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAG 637 Query 18720 TGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTA 18778 |||||| ||| |||||||| ||||| ||||| | ||||| || ||||| | || ||| Sbjct 638 TGATAT-CATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTA 696 Query 18779 ATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTC 18837 | || | || |||||||| | ||| || | | ||| |||| |||||| ||| ||||| Sbjct 697 ACTCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTG-TCATCAGATCTGAATTC 755 Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGT 18869 || || ||||| | || ||||| | ||||| Sbjct 756 ATACCAATTAAACTTACCGGTAGAGATTCTGT 787 >seq244135 Length=507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 47321 AACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTC 47380 |||||| ||||||||| || ||||| | |||| |||| |||||| ||||| || || Sbjct 271 AACAAT---AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTC 215 Query 47381 TATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 | || |||||||||||| ||||| || | || || ||||||||||| | ||| ||||| Sbjct 214 AAAAGCTTCATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAA 155 Query 47441 TAA 47443 ||| Sbjct 154 TAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560080880082240