Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq209393 174 1e-37 seq209394 113 4e-19 seq11950 107 2e-17 seq78081 98.7 8e-15 seq224106 91.5 1e-12 seq281672 89.7 4e-12 >seq209393 Length=1576 Score = 174 bits (192), Expect = 1e-37 Identities = 428/632 (68%), Gaps = 24/632 (4%) Strand=Plus/Plus Query 549962 TTGACATAAGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATAT 550021 |||| | || | | |||| || |||| |||||| || || ||||||||||| || || Sbjct 497 TTGAAAGAATAAAAAATGGCAC-CAAA--AGCTATCGGGATCGATTTAGGAACGACTTAC 553 Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 ||||| || || | || |||| ||||| ||||| |||||||| |||||||| || Sbjct 554 TCCTGTGTGGGAGTATTTCAGCATGGAAAAGTGGAAATCATTGCCAACGATCAAGGGAAT 613 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGGAAACTG-AACATTTAGTTGGTGATGCAGC 550140 |||| || || |||||||| |||| || || |||| || | ||| | || |||||||| Sbjct 614 CGAACGACGCCGTCTTATGTCGCTTTTACAGACACTGCAAGACTTA-TAGGAGATGCAGC 672 Query 550141 AAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGG 550200 || |||||| || ||||| | ||||| | |||||||| ||| | | ||||| Sbjct 673 CAAGAATCAAGTTGCTCTGAATCCAAGTAATACCGTCTTTGATGCCAAAAGACTGATTGG 732 Query 550201 AAGAAGTTTTAATGATTCGACTG-TTCAGGCA-GATATGAAGCATTGGCCTTTCCAAATT 550258 ||| || | || || | |||| || || | ||||||||||| ||| || || Sbjct 733 CAGACAATTCTACGACGAAACCGTTTCA--CAGGACAAAAAGCATTGGCCATTCTAAGTT 790 Query 550259 GTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACA---- 550314 | || ||| || || || | | | || || | | | ||| | ||| Sbjct 791 GAGAACGTTGGGGGCAAGCC-AAGAATCAA---TGTCGAGTA-CAAATGTGAGACAAAGT 845 Query 550315 -ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC-CAGT 550372 |||| | |||||| |||| || | ||||| | | |||||||| ||| ||| ||| Sbjct 846 CATTTACGCCAGAAGAAATCTCTGCCATGGTACTGAGTAAAATGAAGGAAATAGCTCAG- 904 Query 550373 GCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 | | | || || || | ||||| || | ||||| || || || ||||| ||| Sbjct 905 GAATACCTCGGAACCGAGGTCAGAGATGCCGTTGTCACTGTTCCCGCCTACTTTAACGAC 964 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 || || || || || || || || ||||||| || || || ||||| || ||||| || Sbjct 965 TCTCAGCGGCAGGCAACGAAGGACGCTGGACACATAGCAGGGCTTAACGTACTTCGCATC 1024 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA-ACATAATGATC--AA 550549 |||||||| || ||||| || ||| | || ||||| || || || | | |||| || | Sbjct 1025 ATCAATGAGCCCACTGCGGCCGCAATAGCCTATGGGCTCGACAAGAAAAAATGCTCCAGA 1084 Query 550550 GAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||| || || ||||| ||||| |||||| Sbjct 1085 GAAAGCAACGTTCTCATTTTTGACCTTGGAGG 1116 Score = 113 bits (124), Expect = 4e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 551888 TGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATC 551947 ||| | |||| | || | ||| ||||||| || || ||||||| ||| | || ||| | Sbjct 1279 TGCGAGAGCTTTACGAAGACTACGAACTGCATGTGAGCGAGCCAAGCGAACGCTCTCAGC 1338 Query 551948 TGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCC 552007 | | ||| | | ||| ||| | || || ||||||||||| | ||| | | || Sbjct 1339 TTCCGCCCAAGCGAGTATCGAAATTGACTCTTTATTTGAGGGCACTGACTTCTACACCAG 1398 Query 552008 TATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACC 552067 ||| ||||||| | ||||||||| | ||||| ||| | |||| ||| |||| || Sbjct 1399 TATCACGAGGGCTAGATTTGAAGAGCTATGTTCGGATTTATTTAAGGGAACTCTTGAGCC 1458 Query 552068 AGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCT 552127 || || | | ||| || ||| | || || ||||||||| | |||||| | || || Sbjct 1459 CGTGGAGAAGGCTTTGAGGGATGCTAAAATGGATAAATCCGCCATTCATGAACTAGTACT 1518 Query 552128 TGTTGGTGGATCTACAAGAATTCCTAAAATTC 552159 ||||| |||||||| |||| || ||| ||| Sbjct 1519 CGTTGGAGGATCTACTCGAATCCCCAAAGTTC 1550 >seq209394 Length=1434 Score = 113 bits (124), Expect = 4e-19 Identities = 244/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 552225 GTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTA 552284 ||||||||||| ||||| | ||||| || ||||| | || | ||||||| | Sbjct 2 GTTGCCTATGGAGCCGCTGTCCAAGCCGCCATTCTGACAGGGGAGCAAGATGAAAGTGTC 61 Query 552285 CAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGT 552344 || | | | | ||||| |||| || ||||| || | ||||| | ||||| Sbjct 62 TCGGATTTACTCTTACTGGATGTAGCTCCGCTTTCTCTCGGAATTGAAACGGCAGGAGGC 121 Query 552345 ATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTT 552404 | |||||| || ||| | ||||| || || || || ||| | | || || Sbjct 122 GTCATGACTTCACTCATCAAGAGAAACACAACGATCCCAACAAAACAGAAGCAAGTCTTC 181 Query 552405 TCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAA 552464 | || || |||||||||||| |||| || || ||||| | || ||||| || ||| Sbjct 182 ACCACTTACTCAGATAATCAACCTGCAGTGACCATTCAGGTCTTCGAAGGGGAGAGACCC 241 Query 552465 TTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCT 552524 | || ||||||||| || | || | ||| || | | || || ||||| || ||| Sbjct 242 ATGACCAAAGATAATCATTGCTTAGGGAGATTTGATCTGAATGGAATCCCTCCGGCACCT 301 Query 552525 CGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 | ||||| || || || ||||| |||||||| || |||||||| || ||| | ||||| Sbjct 302 AGAGGAGTGCCTCAGATCGAAGTGACTTTCGACATTGATGCCAACGGGATTCTAAATGTC 361 Query 552585 ACTGC 552589 | ||| Sbjct 362 AGTGC 366 >seq11950 Length=2906 Score = 107 bits (118), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || || ||||||||||| ||| || ||| |||||||| | ||||| | |||| Sbjct 416 AGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCT 357 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 |||||||| ||||||||||| || || | || ||||| || || |||||||||||||| Sbjct 356 TCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCC 297 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 || || || || || |||||| || || | | | || || || | ||| Sbjct 296 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTT 237 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||| || ||||| |||||||| Sbjct 236 TTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 205 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || |||||||||||||| ||| || ||||||||| || | ||||| | |||| Sbjct 188 AGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCATCT 129 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || ||||||||||| ||||| ||||| | ||||| || || || |||||||| || ||| Sbjct 128 TCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 69 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 || || || || || |||||| ||||||| Sbjct 68 TGGATCTTGGCCTTGACATTCTCAATCGTATCAG 35 Score = 95.1 bits (104), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || ||||||||||||||| ||| || |||||| ||||||| || || | || Sbjct 644 AGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCC 585 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || || || || || || ||||| || | |||||||| || |||||||| || || ||| Sbjct 584 TCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 525 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 ||||| || || || |||||| || || | | | || || || | ||| Sbjct 524 TGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTT 465 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||| || ||||| |||||||| Sbjct 464 TTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 433 >seq78081 Length=4256 Score = 98.7 bits (108), Expect = 8e-15 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 563278 GTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCG 563337 |||| || |||| ||| ||||| || | || |||| | ||| || || || |||||| Sbjct 2971 GTACCTT-TTTG--AATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCG 3027 Query 563338 GCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTT 563397 ||||| || | | || ||||| ||||| ||||| || |||||||| ||||| || Sbjct 3028 GCAAAGATCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTA 3087 Query 563398 ACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTT 563457 || || || ||||||| | | | ||||| |||| |||||||| || || || Sbjct 3088 ACATTTTCGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTC 3147 Query 563458 TTAACGAAAATTTGCATA 563475 ||||||||||| |||||| Sbjct 3148 TTAACGAAAATCTGCATA 3165 >seq224106 Length=865 Score = 91.5 bits (100), Expect = 1e-12 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 865313 GACTGGAACTTTGTTGGTTAAT-AAAGCAAAAGGACCATGCTTTAATGCAGCTGCAGAAT 865371 |||||| | | | || || ||| ||||||| ||||||||||||||| || | |||| || Sbjct 408 GACTGGCA-TATCTTCGTCAATCAAAGCAATTGGACCATGCTTTAATTCACCAGCAGCAT 466 Query 865372 AACCTTCTGCATGAATATAAGATATTTCTTTTATTTTTAATGAACCTTCTTTAGCAA 865428 |||||||||||||||| || || || ||||| | || |||| |||||| | |||| Sbjct 467 AACCTTCTGCATGAATGTATGAAATCTCTTTAAGCTTCAATGCACCTTCCATGGCAA 523 >seq281672 Length=1211 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 720786 TTCTCCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGC 720845 || |||||| | || || |||||| ||||||||||||| |||| | |||||||||| Sbjct 502 TTGTCCATCACGACCCGCTCGACCAGTTTCTTGATAATACGCTTCTAGATTTTTAGGTAA 561 Query 720846 ACCATAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGT 720905 | || |||| ||| || ||||||| ||||| || ||||| ||||| || | || Sbjct 562 ATCAAAATGCGCAACAAATCGCACATCAGGTTTATCAATACCCATACCAAATGCCACAGT 621 Query 720906 CGCAACCATAACTTTAACTTTA 720927 |||||||||| || | |||| Sbjct 622 AGCAACCATAATTTGTATTTTA 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4014032684261840