Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq28030 104 3e-17 >seq28030 Length=5412 Score = 104 bits (114), Expect = 3e-17 Identities = 513/799 (64%), Gaps = 26/799 (3%) Strand=Plus/Plus Query 36826 TTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATT-CATAACTCCCATT 36884 |||| || || |||||||||||||||| ||| || || | ||| || || Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTC-TTCGGGCTTTGACATCACACCGGCC 1249 Query 36885 TTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 |||||||||||||| ||| |||| || || || ||||||||||| || || || ||||| Sbjct 1250 TTTTGATATTCTCCCACTT-TCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATT 1308 Query 36944 TTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCA- 37002 ||||||||| ||||| || || |||| || || | || | || || || Sbjct 1309 TTCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCA-GTCAAGCTCTACAA 1367 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 | || | |||||| ||||||| ||||| | ||| ||| | || || || | | Sbjct 1368 GGAGTCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 37063 GTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | || |||| || ||| ||| ||| | | | | | || || |||||| ||| Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCT-CGATCGCAACGGCATCTCGAACG 1486 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTT--AAATATTTAAACAATAAACATG 37179 || | || || ||| ||| |||| | || | | |||| | || | Sbjct 1487 ATTTCCGTGATCCGCTCCACAGA--GGGCTTATTAGCGAGATGTCTGAACATGAGGCAGG 1544 Query 37180 CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTG 37239 |||| || || | ||||| || | | || | ||| ||||| || || | || | Sbjct 1545 CAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAG 1604 Query 37240 GCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATAC 37299 |||| | || | || || | ||| || || | ||||| || || || |||||||| | Sbjct 1605 GCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCC 1664 Query 37300 CTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA---AGTTGAACTATAATCAGAAA 37356 |||| || || ||||| |||| | || || || || || || | | | Sbjct 1665 CTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCG--- 1721 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTT 37415 |||| |||| | |||| | ||||| || || | || || | | || | || || Sbjct 1722 TCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGT-TGTCCAGGGCGTTA 1780 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 ||||| ||||| || |||| | ||||| || ||||| ||||| |||||| Sbjct 1781 AAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATT 1840 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||||||||| ||||| || || | |||||| ||||| || || | ||||||| | | Sbjct 1841 TCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACT 1900 Query 37536 TGAA---CATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || | || || | ||| | || | | ||| |||||||| || || ||| || Sbjct 1901 TGGACCTCAGCGGTGAAA---CGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCA 1957 Query 37593 GCAAAGAAAGCAAGAACAT 37611 || || || ||||| |||| Sbjct 1958 GCGAAAAAGGCAAGGACAT 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590179898680640