Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq61270 165 7e-36 >seq61270 Length=8000 Score = 165 bits (182), Expect = 7e-36 Identities = 443/670 (66%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 29721 CTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29780 ||| ||||| || | || |||||| ||| || | | | | || ||||| || | ||| Sbjct 7687 CTTGAAGTCCTCGATATTTTCCACCTTCCGCTTGAGCGTAATGGTAGGAAACGGACGGGG 7628 Query 29781 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 29840 ||||| || | ||| || ||| | | ||||| | ||||| || || || || Sbjct 7627 CTCCCGCTTCAACTGCTCCTCCAGGGCATTAACGTGGTTATTATAGACATGGGCATCCCC 7568 Query 29841 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29900 ||||| || | ||| || || || | || || || || || ||||||||| || || Sbjct 7567 CAGGGAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACATGGGCCATCATGATGGTTAG 7508 Query 29901 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 29960 || | |||||||| |||||||| ||||| || || ||||| || | || | ||| || Sbjct 7507 AAGGGCATAGCTGGCAATGTTAAATGGTACACCAAGACCCATATCAGCAGAGCGCTGATA 7448 Query 29961 GAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAAACTGACACATGGT-GTGGCACGGA 30018 | || || || ||||| |||| ||| ||| || ||||| ||| | |||||||||| Sbjct 7447 CATTTGGCAAGAAAGCTCCCCGTTCGC-CACATAGAACTGT-ACAAGACAGTGGCACGGA 7390 Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 || | ||||| | | ||| | | |||||| || |||| | || || | || Sbjct 7389 GGCAAGGCCATTAAATGAAGATCTCTCGCGTTCCAAGCACACATCACCATACGACGATCG 7330 Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138 || || || || | ||| || | | || ||||||||||| ||| |||| | | Sbjct 7329 TCCGGATTACTCTTAATGGTCTCAATAACCTTCCCAAGCTGATCCACACCCTTCCCAGCG 7270 Query 30139 TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30198 |||||||| |||| ||||| || || || |||||||| || ||||| || ||| Sbjct 7269 TAGTCTGCATGCATGGTATCATACTCCGCGCCAAAGTGCCTCCATTGAAACCCATAGACC 7210 Query 30199 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 || || | ||||| ||||||| | | |||||| | ||||| | | | | || Sbjct 7209 GGCCCTAAATCTCCTTCTTCCCGTTCTTTAAAGCCCATGGAGTCCAGATATGCCCGAGAG 7150 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 || |||||||||| || ||||| | ||| |||| ||||| || || Sbjct 7149 GAATTCCCGTCCCAGATGCGCACATTTTTCTCCTTCAACTCATTGGCATTTGTTGAGCCC 7090 Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGA 30376 | | |||||| | || ||| || ||| || | || ||||| |||| || |||| Sbjct 7089 CGAATGAACCAAAACAACTCTTCTGCGA--TCCCACGAATGAAGACTTTCTTTGTTGTGA 7032 Query 30377 GGAGGGGAAA 30386 |||| ||||| Sbjct 7031 GGAGAGGAAA 7022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407180284527368