Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_018276.1 Length=44988 Score E Sequences producing significant alignments: (Bits) Value seq55513 116 1e-21 >seq55513 Length=14626 Score = 116 bits (128), Expect = 1e-21 Identities = 254/378 (67%), Gaps = 2/378 (1%) Strand=Plus/Minus Query 36530 GACCCTTTTGCTAATACAAATAAGATAGCAAAGTACACCAATGATATAGACGAA-AGTAC 36588 ||||||||||| || | |||| || |||| | || ||||| | ||| | | || Sbjct 8243 GACCCTTTTGCAAACTCTAATAGAATTGCAATGGTTACAAATGACCTTGACCCACAATAT 8184 Query 36589 GGGCGCAGGTAGTAATATGGAAGCTTTAGAATTTCTAAAAACTTTTGCAGATAAAAGCTT 36648 | | ||| | |||| | || |||||||| || |||||| |||| | || || | Sbjct 8183 GA-CACAGATTATAATTTAGATGCTTTAGACTTCTTAAAAAAGTTTGATAACAATAGTGT 8125 Query 36649 GGATTTAGTTTTGTTTGACCCACCTTATAGCCCAAGGCAAGTAAGTGAATGTTATAAAAA 36708 || || || |||||||| || || ||| || || ||||| || || ||||| ||||| Sbjct 8124 TGACTTTGTGTTGTTTGATCCTCCATATTCTCCTAGACAAGTTAGCGAGTGTTACAAAAA 8065 Query 36709 ATTAGGCAGAACGGTTAATATGGAAACTACGCAGGCATCTTTTTGGAGTGATTGTAAAAA 36768 ||||| | || ||||||||| |||| || || ||||||||||| | || ||||| Sbjct 8064 TTTAGGTAAGACAGTTAATATGCAAACAACCCAATCATCTTTTTGGGGAAATATGAAAAA 8005 Query 36769 CGAGATAGCCCGAATACTTAAACCTGCTGGCGTGGTTCTTTGTTTTGGGTGGAACAGCCA 36828 || | || |||| | ||| | ||| | || | |||||| |||||| Sbjct 8004 AGAACTTTCCAGAATTGTAAAAGACGATGGAATTGTAATAACTTTTGGATGGAACTCTGG 7945 Query 36829 AGGCGTAGGaaaaaaaaGAGGGTTTACAATGGAAGAAATTTTATTAGTAGCCCACGGCGG 36888 || |||| |||| | ||||||||| |||||| ||| | | || ||||| || Sbjct 7944 CGGAATAGGTAAAAGCAATGGGTTTACACAATTAGAAATATTAATGATTGCTCACGGTGG 7885 Query 36889 GCAGCATAATGACACTAT 36906 | ||||||||| || || Sbjct 7884 GTGGCATAATGATACAAT 7867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143347015010400