Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq25889 233 7e-57 seq1065 154 6e-33 >seq25889 Length=7070 Score = 233 bits (258), Expect = 7e-57 Identities = 583/880 (66%), Gaps = 4/880 (0%) Strand=Plus/Plus Query 14615 GTAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCAC 14674 ||| ||||| | ||||| | || |||||||||||||| || | |||||||||||||| Sbjct 3754 GTACGGGCCTAAAAATCTTTCGCCATTGAAGTGAATAAGGTGGGTCGGTGCATCAGCCAC 3813 Query 14675 CCATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGG 14734 ||| |||||||||||||| || ||||| | ||| || ||||| | | || || || Sbjct 3814 CCACACCTCTGTTTCCCAAGCTATTTCCGGCAAATAACGTCCCATCAAGCTACGGTTAGG 3873 Query 14735 AAAAGCGGTCACATAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGC 14794 ||||||||| ||||| ||||| || || || || ||||| | | | || | ||| | Sbjct 3874 AAAAGCGGTAACATACACAAGGCCAGCAGTGGAGGTAGCAAATAACTTTGCCAACTCGCC 3933 Query 14795 ATGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTT 14854 || ||||| || ||||| || || ||||| || || || | || |||| |||||| Sbjct 3934 GTGTCGCTTTCCGTCAACAGGGCCGTGACTCGTAACGCTTTCGATCAAAAGCAACCAGTT 3993 Query 14855 TTTCGCAGTAAAATGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACC 14914 || || || || | | || |||||||| || ||||| ||| || || || Sbjct 3994 CTTTTGTGTGAAGTGCAAAATGACGTCTGGCATCTTGCCGTGACTATCTACTGTCACGCC 4053 Query 14915 TAGCCCGGCCAGCAGTGGAGCGTCGAAGTAGCCCCACTTTTCGCCAGTGTCGCCAGCATA 14974 ||| | || ||| | | || || |||| | || | || || || || ||||| Sbjct 4054 CAGCTCTGCGAGCTTTTCTTCATCAAAAAAGCCTAATTTCGCACCTGTATCACCCGCATA 4113 Query 14975 GACCAGCACGCTACCCGGAGCAAAACGTGGGGCGAAGTCCTCTATTATGGCACGGATAAG 15034 | ||| ||| || || ||||| ||||| ||||| || || || | |||||| Sbjct 4114 TATTAGCTGGCTGTTTGGTGCGAAACGCGGGGCAAAGTCTTCAATAATTTGTCTGATAAG 4173 Query 15035 TTCGCTGTGCTCGCCGGGACTGAGGGTTATTTGCTGGCCCGCAGCAATTTCAACAGGGAT 15094 ||||||||| ||||| | | | | || | || ||| | || || || Sbjct 4174 TTCGCTGTGATCGCCAGCTGTCAAAACCAATTTTTTACCATCAGATGTAGTTACTGGTAT 4233 Query 15095 ACGATTCTGTTCGCGCTCCTTAGCATAGCGGGTAACCAGCGTTTCACGCTCGGCTAAATA 15154 | | || || |||||| ||||||| | ||| || ||||| | | | || Sbjct 4234 GAGTGTTTGCTCTCGCTCCATAGCATACTTAGCAACGAGTGTTTCTATATTTTCAAGATG 4293 Query 15155 GGTTG-CAAGGCTATCGTGCCATGCCGGGCTGCCGAAAGTGCGTAGCATGGACAGAGCAG 15213 | | |||||| | | |||| | | ||| | | || | || | || Sbjct 4294 TGCGGCCAAGGC-ACTTTCCCATTCACCCGTCCCGTATTTTTTAAGAAGCTCAAGCGAAG 4352 Query 15214 CAGGTTCGATCTGATAAACAGCCTTCGGGCTGTTCACTGGGCGATCGGGCTTGTCCGGAT 15273 | || || |||||||| || ||||| || ||||| ||||| ||||| |||||||| || | Sbjct 4353 CTGGCTCAATCTGATATACGGCCTTTGGACTGTTTACTGGACGATCTGGCTTGTCTGGGT 4412 Query 15274 TGTAGAGGGCTACTCCAGCAGCGCAGAACTGATGCATAGACTGGCGGCGGAATGTCTCAC 15333 ||||||| || | || ||| |||| ||||| ||||| | || || || || ||||||| Sbjct 4413 TGTAGAGCGCCAAGCCTGCATCGCAAAACTGGTGCATGGTTTGACGCCGAAACGTCTCAC 4472 Query 15334 GAGTATTGGGTGCGTAGACCTTGCCGTAGTGCTCCCGAACCCAATTCATGATTGGTGTAA 15393 | | || || || ||| ||| || || | | | ||||| |||| || || |||| Sbjct 4473 GGCTGTTTGGCGCATAGTGCTTCCCATATTCTTGACTGGCCCAAGTCATCATAGGGGTAA 4532 Query 15394 TGCCCACAAGCGGATTTTCCGCGTCGGCCCATGCTTTT-CCCGGTGTGAGGTTCAGGAGT 15452 |||||| || || ||| || || | ||| |||||| || || | ||||| || Sbjct 4533 TGCCCAGCAGTGGGTTTGAAGCCTCTGACCA-GCTTTTATTGGGGGTCATGTTCAACAGA 4591 Query 15453 GCCAGCAAACACAAAGCAGAACGCTCATTCTGCTGCGCTC 15492 | ||| | || || || ||||||||||| || || |||| Sbjct 4592 GACAGAAGGCATAATGCCGAACGCTCATTTTGTTGTGCTC 4631 >seq1065 Length=12871 Score = 154 bits (170), Expect = 6e-33 Identities = 518/797 (65%), Gaps = 26/797 (3%) Strand=Plus/Plus Query 14616 TAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCACC 14675 || ||||||||||| ||||| || || || ||||||||||| | |||| || || | Sbjct 8381 TAAGGGCCAAGAAACCGCACACCATTAAAATGAATAAGATGGGTTGGTGAGTCGGCACAC 8440 Query 14676 CATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGGA 14735 ||||| ||||| ||||||| ||||| | ||||| ||||| || |||| ||| Sbjct 8441 CATACTTCTGTCTCCCATGAAATTTCGCTTAGATACTTGCCCATAATTTTTCGATCGGGA 8500 Query 14736 AAAGCGGTCACATAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGCA 14795 || ||||| ||||| ||||| || | || || | | ||| || |||||||||| Sbjct 8501 AACGCGGTGACATACACAAGCCCAGGTGAAGAATCAGAAAAAAGTTCGGCAAGCTCATTG 8560 Query 14796 TGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTTT 14855 || || || ||||||| || || ||||| |||||||| |||| | || ||||||| | Sbjct 8561 TGTCGTTTAGCATCAACAGGCCCGTGACTAGTGACAGATTCAATTAATAATAGCCAGTCT 8620 Query 14856 TTCGCAGTAAAATGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACCT 14915 ||| ||| | ||||| ||||| |||||||| || ||| || ||| || || Sbjct 8621 TTCTGCCCAAAGTAGAGCACTACATCAGGCATTTTCCCATGTTGGTCTACAGTTACGCCA 8680 Query 14916 AGCCCGGCCAGCAGTGGAGCGTCGAAGTAGCCCCACTTTTCG-CCAGTGTCGCCAGCATA 14974 | | || || | | | || || | |||| |||||| | || || || ||| | || Sbjct 8681 AATTCTGCTAGGCGCGTTGACTCAAAAT-GCCCAACTTTTTGCCCCGTATCACCAACGTA 8739 Query 14975 GACCAGCACGCTACCCGGAGCAAAACGTGGGGCGAAGTCCTCTATTATGGCACGGATAAG 15034 | | | | | | || ||||| ||||| ||||| || | || ||| | ||||| Sbjct 8740 TATAACCTCTGAAGCAGGGGCAAAGCGTGGAGCGAAATCTGCGATGATGTCTTTAATAAG 8799 Query 15035 TTCGCTGTGCTCGCCGGGACTGAGGGTTATTTGCTGGCCCGCAGCAATTTCAACAGGGAT 15094 | ||| || ||| || | | | || | | || ||||||||| |||||| || Sbjct 8800 CTGGCTATGAATGCCAGGTGTTAAAGCAATCTCTTTTCCTCCAGCAATTTGAACAGGAAT 8859 Query 15095 ACGATTCTGTTCGCGCTCCTTAGC----ATAGCGGGTAACCAGCGTTTCACGCTCGGCTA 15150 | | ||| || | || || | |||| | |||||||| || | | | Sbjct 8860 CATCTGCATTTCTCGATGTTTTGCCCATTTTGCGG----CAAGCGTTTCTTGCCCTTCAA 8915 Query 15151 AATAGGTTG-CAAG--GCTATCGTGCCATGC--CGGGCTGCCGAAAGTGCGTAGCATGGA 15205 ||| |||| |||| ||| || ||| | | | | ||| | || | ||| Sbjct 8916 GATACGTTGCCAAGATGCTTTC---CCAATCATCAGCC--CCGTACGT---TTTTATGAC 8967 Query 15206 CAGAGCAGCAGGTTC---GATCTGATAAACAGCCTTCGGGCTGTTCACTGGGCGATCGGG 15262 | | ||| || | ||||||| ||| || || || || || | ||| |||| Sbjct 8968 CTCAAAAGCCTCGTCACTCACCTGATAACAAGCTTTTGGACTATTAACGGCACGAGCGGG 9027 Query 15263 CTTGTCCGGATTGTAGAGGGCTACTCCAGCAGCGCAGAACTGATGCATAGACTGGCGGCG 15322 | ||| |||||||| | ||| | |||||| | ||| |||||||| | || || || Sbjct 9028 ATCGTCAGGATTGTATACGGCAATTCCAGCTTCAACGAATTGATGCATCGTTTGACGACG 9087 Query 15323 GAATGTCTCACGAGTATTGGGTGCGTAGACCTTGCCGTAGTGCTCCCGAACCCAATTCAT 15382 || |||||||| ||||| || || || | |||||| || || || | | ||| Sbjct 9088 AAAAGTCTCACGCGTATTTGGCGCATATTCTCGGCCGTAATGTTCTCGGCAATATTCCAT 9147 Query 15383 GATTGGTGTAATGCCCA 15399 |||||| || || |||| Sbjct 9148 GATTGGGGTTATACCCA 9164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194071767418752