Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_018854.1 Length=69855 Score E Sequences producing significant alignments: (Bits) Value seq121188 298 2e-76 seq76541 147 1e-30 seq266624 105 3e-18 seq101439 100 1e-16 seq121189 91.5 7e-14 >seq121188 Length=15723 Score = 298 bits (330), Expect = 2e-76 Identities = 921/1389 (66%), Gaps = 55/1389 (4%) Strand=Plus/Plus Query 65225 CAGCATGGAGATAGTATCAATACAGTCATCCTTACCTTTGATTCCATTAATGGTAGCTAG 65284 || ||| ||||| ||||| | ||||||||||||||||| | |||| ||||||| | Sbjct 273 CAACATAGAGATGGTATCGAGGCAGTCATCCTTACCTTTCAAACCATCTTTGGTAGCCAA 332 Query 65285 TTTAATCTGGCCCATGAACAGACCCATAATAGTTGA--ATCTCTCAACTCTTCCGGGAAG 65342 ||||| ||||||||| |||| || |||| |||| ||| ||| ||||| Sbjct 333 AGAGATCTGTTCCATGAACAAGCCCAGAAC--TTGAGTATCTTTCATCTCCAAGGGGAAC 390 Query 65343 TACATCTTACCAGCTTTGAACCATGGAACTACCAGGTTAAAGCGTGACAGCTTAGAGGTT 65402 | ||||| ||||| || || ||||| ||||| ||||| | ||| ||| || Sbjct 391 TTGATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTATCTGTC 450 Query 65403 ACAGGACGTATACCCGGCTTACCACCTTCAGAAGATGCAAAGTTAAAGAAGACATTACGG 65462 | || || |||||||| ||||| |||| | | |||| ||| ||| | | | | ||| Sbjct 451 ATGGGTCGGATACCCGGTTTACC--CTTCTGCTGG-GCAAGGTTGAAGTAAATACTCCGG 507 Query 65463 TTAATCATTTCTTTC-TGAAGGAGCGAAATGAATCCACCTTGCTGCCCTGTGATTTCGAC 65521 | | |||||| | ||| | | | | || ||||| ||||| || || || || || Sbjct 508 TAATCCATTTCACGCATGATCCATTGGA-TAAACCCACCCTGCTGACCAGTAATCTCAAC 566 Query 65522 ACCAACGTTTTGTGGTTGGTATTCTTGAACCAGACGGAACAGGTCATCAAAGTTTTTATC 65581 ||| ||| | ||||| | ||| || | ||||| ||| |||| || || | |||| Sbjct 567 ACCGACGCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGATTGAGGTATC 626 Query 65582 CATAAGCTGACGATTAGCCACACCATCAACCCAGAACCAATCTCCATTAGAACTATAAGC 65641 ||| ||| ||| | ||||| ||||||||| |||||| ||||| || ||| || Sbjct 627 CATTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGC 686 Query 65642 CCAAACTGATATGACACTATAGTCACTGGTCTGTTTCTCCGATGTAGCAAAGTCAGTTGT 65701 ||| |||||| || ||| || || |||||| ||| || ||||||||||| || Sbjct 687 CCATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGT 746 Query 65702 AATATAATAGTTGTAGCAGGACTTCATCCTTAATAGTTGCTGTCTGCT-ATACCATCTAA 65760 || || | || || ||| || | | || | || | | |||| | | Sbjct 747 GATGTAGAACTTATAATCCTTCTTGTTCGCAAGGATGTG-TTTCCGTTGGAACCAACCGA 805 Query 65761 TTTCACTATCCTGAACCA---GTCTCTCATCTTCAGAGCT-AATACGGAGCATAAGTTCC 65816 | |||| |||||||||| | |||||| || || ||| || |||||||| ||| Sbjct 806 TGTCACCTTCCTGAACCAAACGAGACTCATCATC----CTGAATCCGAAGCATAAGCTCC 861 Query 65817 TGATAGAA-GCCTGCCAGCTTACCCGTCTTAACTG-CCATGTCATATTGGGCTTTGATGT 65874 ||| ||| | || | || ||| || | || || | ||| || | |||| | | Sbjct 862 TGACGGAACGACT-CAAGTTTA-CCTTGTTGCTTGAAGAAGTCGTAATCCTCTTTCAACT 919 Query 65875 AGTCGTAGGAGAAACGGTCATCCCATGCACCTTGAAATTCTTCCCTACTACAAGGGAACT 65934 |||||||| ||||| || |||||| ||| || || | | || | ||| |||| Sbjct 920 GGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACAGGAAACT 979 Query 65935 TCTCACACACAGGCCATACGTTGACATCCCATGCACCAGACTCTACTGCTTCAATGATAA 65994 || |||||| ||||| ||||| || ||||||||||||||||| | ||||| | | | Sbjct 980 CCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTTGATACACGA 1039 Query 65995 TATCTTCCTTATTAAAGGGAGTACCATTGAAGATTACTTTACGACGGGT-AGGATCAAGA 66053 | || | ||| | |||||||| ||||| ||| || | | ||| | || | |||| Sbjct 1040 TGTCGTTCTTGTCGAAGGGAGTCCCATT-CAGAATAGTCTTTGACTTTTGTGGGTGAAGA 1098 Query 66054 GCATGGTTCACACCTTTATAGACGGTATCCTTAATAGCTTCCATACTCG-TCTTGGAG-- 66110 || |||| | ||| || || || ||||| ||||| |||| | ||| |||||| Sbjct 1099 GCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCA-TCGCAGTTGGAGAC 1155 Query 66111 TTAGCATCACCATCACTAATCAAGTCATCCAGTAC-GCATAATGTTGGACGTTTACCATA 66169 || ||||| |||| ||||||||||| || || ||| | | || ||||||||| | Sbjct 1156 TTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCA-AGCGAAGGTCGTTTACCAAA 1214 Query 66170 TATCTTCGTACCACGAAGACCTGTCTTAGCACCAAACAGCTTAACACCTAGACGATGTCC 66229 |||||||||||||| | ||| | ||| ||||| |||| ||||| | || ||| Sbjct 1215 GATCTTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACACC-AAACTTATTCC 1273 Query 66230 TTCTACATTACGAAACTCTAACAGGTTATCCGT------AAAGGTAGCTTCAGGTATCCA 66283 |||| || ||||| | ||| || || || |||||| || ||||| Sbjct 1274 NNCTACGTT---GAACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTTCTGGCATCCA 1330 Query 66284 TTGCTGAAGGAACTCACTATTCTTGTAACGAAACTCAATGTTCTTACGTGCAGATTTAGC 66343 ||||| || ||||| | | |||||| | || || ||| || || || | Sbjct 1331 GTGCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAGCGGACTTCAC 1390 Query 66344 ACCGTTATCCATTGAGTCAGATACATAAATCATTCCTTCTACTTTACCCAGGCTTGGTAA 66403 ||| || ||||| ||||| || | ||| | ||| | || ||||| || | | || | Sbjct 1391 ACCATTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTCCCAAAACCGGGAAG 1450 Query 66404 ATGCCCGAACACTGCCAGGAACAATGTAAAGTATTCCATGAATACAGCAGTCTTACCTGC 66463 ||| ||||| ||||| |||| || | |||||| | ||| | || || || | | Sbjct 1451 ATGATTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTGGTTTTCGCAGA 1510 Query 66464 ACCACGGAAGCACAGATTAACTACATACTGGTTCGGGCTAATCATC---TTATCCAACAT 66520 ||||||||| |||||||| || || | | ||| ||| || || || |||||||| Sbjct 1511 ACCACGGAAACACAGATT-GGTA-AT-CCGTTTCTTGCTGTTCGTCACTTTGTCCAACAT 1567 Query 66521 TTTCAGGTGAACTGGAGGTGTTTTGTTGGATTCACCCTCTTTAC---CATTAACCAACTT 66577 ||||| | | ||| ||||||| | | | ||| |||||| |||| |||| ||| Sbjct 1568 GGCAAGGTGCATGGAAGGAGTTTTGT--GCTCCTCCC-CTTTACCGTCATTCACCAGCTT 1624 Query 66578 AATAAAGTT 66586 || ||||| Sbjct 1625 GATGAAGTT 1633 >seq76541 Length=11138 Score = 147 bits (162), Expect = 1e-30 Identities = 213/298 (71%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 24247 GATGTATCACAACATTAGCTACGACGTGTATGTGCTTATCTATCAATTATTCATGGATAA 24306 ||| ||||||||||| |||| ||||| |||||||| || ||||| || || |||||| | Sbjct 714 GATCTATCACAACATCTGCTATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATCA 655 Query 24307 CCTGATTGATACAGAAGGCTTACTGCATGGTATGGAAATCATGCTACGCAACTGGGACTG 24366 | | |||| ||| || | || | ||| ||||| || | |||||||||||||| || Sbjct 654 CATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAATG 595 Query 24367 TACTAAGTTAATCACCTACCTGGCTACTAACAGTTGTGCTGGTAATCACCTTAGTCTAAA 24426 ||| || | ||||| || ||||| || || ||||||||||| | | |||| || Sbjct 594 TACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAA 535 Query 24427 AGACCAGGCTCAGGAGTATGCTGGTAACTATGCTCAGGATGACATTAAAGACATTCGTCT 24486 | ||||||||||||| || || ||||||||| || ||||| | ||||| | Sbjct 534 GGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCA 475 Query 24487 TATTCCTAATGAGCAA-CTCTTACGTTACAACCTCATTGATGGTTTATGTACCTGGTA 24543 || ||| || || ||||| ||||||||| | ||||| ||| ||| ||||| Sbjct 474 GATCCCT-CTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTA 418 >seq266624 Length=731 Score = 105 bits (116), Expect = 3e-18 Identities = 178/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 57537 ATTTCTACGTACTGTTCATTGGTAATACGTACTACTTCCTTCTCAGATAAGAATACGGCA 57596 ||||| || ||| ||| || || ||| || ||||||| ||| ||||| ||| Sbjct 320 ATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCA 379 Query 57597 TTCATTGCACAAATCTTAGTACCAAT-GTCTGCCATACCCTTAGCTAATCGACGAAGGAT 57655 |||||||| ||||| ||| || |||| |||||| || || | ||||||| || Sbjct 380 TTCATTGCGATGATCTTCTCACCGATCTTCTG-CATACCTTTGGCCAGACGACGAACAAT 438 Query 57656 TGCCATCTCACGTTTGGATGCTGCATCGAGTGCACCACGAATACCAGCAGCCACATCTCC 57715 |||||| || |||| | || || ||||| || ||||||| || || || Sbjct 439 GCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACC 498 Query 57716 ATAAGCTGCACCAGTTACACCTCCAGAGAATGCTTTAACACCAGTTAGTGCTTCTGCTTC 57775 ||| || |||||| | ||| || ||||||| ||| || || || |||||||||||||| Sbjct 499 ATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTC 558 Query 57776 CTGGTTCTGCATCTG 57790 |||||||| | ||| Sbjct 559 TTGGTTCTGGAGCTG 573 >seq101439 Length=6781 Score = 100 bits (110), Expect = 1e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 52508 TTGCGTTAGTGAAACCATTAGGAGGATTCAAGCCTTCATCAATAGTCTTCTGTGTAATCC 52567 ||||||| || || | ||||| ||||| ||||| || | ||||||||| ||||||| Sbjct 2446 TTGCGTTGGTCAACTGAGCAGGAGCATTCAGACCTTCGTCCAAAGTCTTCTGAGTAATCC 2387 Query 52568 ATGCATCAGTAAACAACTTAGATGCTTTGACTTCTGCATCACGTTGGT-AAGAAGTA-AT 52625 | |||| | ||| ||| | | ||| | ||||| ||| | ||| || || Sbjct 2386 AACCATCCAAATACATCTTGGCAGTCTTGTGAGCAGCATCT--TTGATGAAGCTGTCGAT 2329 Query 52626 CTGTTGAGAGTACAACTCTTTCTGTTTACCTACAGAACCAGTAACAGTAGCACCATCACT 52685 ||||||| |||| |||||||| || || |||||||| |||||| ||||||||| Sbjct 2328 CTGTTGATCATACAGGTCTTTCTGCTTGCCGACAGAACCTTCAACAGTTGCACCATCAGA 2269 Query 52686 ACGAGTATCCAGTGTCTGTGCACGTT 52711 ||||||||||| ||| | ||||||| Sbjct 2268 ACGAGTATCCAATGTTTTGGCACGTT 2243 >seq121189 Length=2370 Score = 91.5 bits (100), Expect = 7e-14 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 12355 TGGCATCTGCAATTGAGAAGTTCAACATGTCCCCA-TCCTGTGTAGCTATCGTTCACGAT 12413 |||| || || ||||| ||||||||||| | | ||| || | | | |||||||| Sbjct 1746 TGGCTTCGGCCATTGAAGAGTTCAACATGCCAGTAGATCTG-GTTGGTGTTGTTCACGAC 1804 Query 12414 AAGTCTACATGGGCAAGACGTGCATTATCTGTGTTCAATACCGTAATAGAACCAGGATGG 12473 || || || ||||| ||||||| | ||| ||||| || || || ||||| || ||| Sbjct 1805 AAATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGAACCGGGTTGG 1864 Query 12474 AAAGGGTATTTGACTCTTGAACTGGTCTATCATGGTCGTAAGAAACTACATATCCCGGCT 12533 ||||| |||| || | || || || ||||| ||| | || |||||||||| | Sbjct 1865 AAAGGTCATTTAACATTAGAGCTTGTTTATCACGGTAGCGAGGGTATACATATCCCATCA 1924 Query 12534 GGTGCTGGGATAGCTCAAGTATTATTTCA 12562 || ||| || |||||||| ||||||| Sbjct 1925 GGATGTGGAATTGCTCAAGTGCTATTTCA 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 222625349428416