Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq96244 134 2e-26 >seq96244 Length=3811 Score = 134 bits (148), Expect = 2e-26 Identities = 179/246 (73%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 197038 AAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCGGGATTGTAACAGGCG 197097 || || || || || || || ||||||| ||| || ||| || |||| || ||||| Sbjct 2353 AATCCGGTTCCAATTTTGCAGATGGATTGGTATTCCTCGTTTTCTGGATCATAGCAGGCC 2294 Query 197098 AGTAAGAAAGCG-CCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAAC 197156 || | |||||| || ||| | || || | ||| ||| ||| || ||||| || || Sbjct 2293 AGGA-GAAAGCCACCATAGCTCCCTGTCCGCTTGCCCTTCCCAAGAAACCCTCCAATCAC 2235 Query 197157 CACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCT 197216 || ||||| ||||| || | || || || | ||| || ||||| || ||||||||| | Sbjct 2234 TACGAGATCAAGAGTATCCCCAACACCGTCGAGGTAGTCCTTCTTTAGCTTGAGCCAGTT 2175 Query 197217 TCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATCAATCC 197276 || ||||||||||||||||| ||||| || |||||||| ||||| | ||| | ||| Sbjct 2174 GTGGGACCTCTTGGCAATCTCGTACGTTGCCTTCACGTCCAGAGTCTTTACCATGAGTCC 2115 Query 197277 CTCGCA 197282 |||||| Sbjct 2114 CTCGCA 2109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 674288162622080