Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11950 96.9 3e-15 seq78081 89.7 4e-13 >seq11950 Length=2906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| |||||||| || | ||| |||| || | |||||| || || || Sbjct 623 TCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 564 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| ||||| | ||||| ||||||||||| |||||| || || Sbjct 563 ATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTC 504 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||||| ||||| | || || ||||| || || | ||| || || Sbjct 503 TCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACG 444 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 443 AAGATTTGCAT 433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| |||||||| || || || || || | ||| |||| || Sbjct 869 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGACAGGGTGCGACCGTCCTCT 810 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || ||||| ||||| | ||||| ||||||||||| | Sbjct 809 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 750 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | ||||| ||||| || || | || || || ||| Sbjct 749 ATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGATGGTCTTT 690 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || |||||||| ||||| Sbjct 689 CCAGTAAGGGTCTTGACAAAAATTTGCAT 661 >seq78081 Length=4256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||||||||| ||||| || || || |||| | || || | |||||| |||||||| | Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAA 48695 ||| ||||||||||| | || | |||||||| || || ||| || || ||| Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGAT-TTTGGTCTTAACATTT 3093 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||| | ||||| ||||| ||||| | || || || Sbjct 3094 TCGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACG 3153 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 3154 AAAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379597649134968