Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019423.1 Length=72570 Score E Sequences producing significant alignments: (Bits) Value seq121188 246 1e-60 seq76541 136 2e-27 seq266624 96.9 2e-15 seq121189 86.0 3e-12 >seq121188 Length=15723 Score = 246 bits (272), Expect = 1e-60 Identities = 663/994 (67%), Gaps = 25/994 (3%) Strand=Plus/Minus Query 67007 TGTTTGGTGCTAAGACAGGTCTTCGTGGTACGAAGATATATGGTAAACGTCCAACACTCT 67066 |||| ||||| ||| | ||| | |||||||||||||| | ||||||||| || | || Sbjct 1252 TGTTCGGTGCCAAGTCTGGTATCCGTGGTACGAAGATCTTTGGTAAACGACCTTCGCTTG 1193 Query 67067 GTGTACTGGATGACTTGATTAGTGATGGTGATGCTAACTCTAAGACTAGCATGG--AAGC 67124 || || ||||||||||| |||| ||||| || ||| ||| |||| ||| Sbjct 1192 CAGTTCTCGATGACTTGATCTCAGATGAAGATGCGAAGTCTCCAACTGCGATGGCGAAG- 1134 Query 67125 TATTAAAGATACCGTCTATAAAGGTGTGAACCATGCTCTTGACCCA-ACCCGTCGTAAAG 67183 ||||| ||||| || || || ||| | |||| |||||| ||||| | ||| | | Sbjct 1133 -ATTAACGATACTGTTTACAAGGGTTTACACCACGCTCTTCACCCACAAAAGTCAAAGAC 1075 Query 67184 TAATCTTCAACGGTACTCCCTTTAATAAGGAAGACATTATCATTGAGGCTGTTGAGTCTG 67243 || ||| || || |||||||| | ||| | ||||| | | | || | ||||||| Sbjct 1074 TATTCTG-AATGGGACTCCCTTCGACAAGAACGACATCGTGTATCAAGCAATCGAGTCTG 1016 Query 67244 GTGCATGGGATGTAAACGTATGGCCTGTATGTGAGAAGTTCCCTTGCAGTGAAGAAGAAT 67303 |||||||||| || ||||| ||||| || ||| || |||| ||| | | |||||| || Sbjct 1015 GTGCATGGGAGGTGAACGTTTGGCCAGTGTGTAAGGAGTTTCCT-GTTGATAAGAAGGAT 957 Query 67304 TTC-AGGGTGCATGGGATGACCGTTTCTCTTACGACTACATCAAAGCCCAATACGATATG 67362 ||| | |||||| || ||||| | |||||| | | |||| | ||||| | Sbjct 956 TTCCAACCAGCATGGCCAGAACGTTTTACCTACGACCAGTTGAAAGAGGATTACGACTTC 897 Query 67363 G-CAGTTAAGACCGGTAAGCTGGCAGGC-TTCTATCAGGAACTTATGCTCCGTAT-CAGT 67419 || || | ||||| || | || | ||| |||||| |||||||| || || ||| Sbjct 896 TTCAAGCAACAA-GGTAAACTTG-AGTCGTTCCGTCAGGAGCTTATGCTTCGGATTCAG- 840 Query 67420 TCTGAGGATGAGAGAC---TGGTTCAGGATAGTGAAATTAAATGGTACAGCAGGCAGCAG 67476 || |||||| | |||||||||| |||| || |||| | || | || Sbjct 839 ---GATGATGAGTCTCGTTTGGTTCAGGAAGGTGACATCGGTTGGTTCCAACGGAAACAC 783 Query 67477 CTATTAAGGATGAAATCCTGCTACAACTATTACATTACAACTGACTTTGCTACTTCGGAG 67536 | | || || || || | ||||| || ||||||||||| || ||| | Sbjct 782 ATCCTTGCGAACAAGAAGGATTATAAGTTCTACATCACCACTGACTTTGCCACGTCGTCG 723 Query 67537 AAACAGACCAGTGACTACAGTGTCATATCAGTTTGGGCTTATAGTTCTAATGGAGATTGG 67596 ||||| || || || || |||||| ||||| ||| || ||||| |||||| Sbjct 722 AAACAAACTGCGGATTATTCCGTACAATCAGTATGGGCGTATGACTCGAATGGGGATTGG 663 Query 67597 TTCTGGGTTGATGGTGTGGCTAATCGCCAGCTTATGGATAAAAACTTTGATGACCTGTTC 67656 ||||||||| ||||| | ||| ||| ||||||| | || || |||| Sbjct 662 CACTGGGTTGACGGTGTTTGTGCTCGACAGACAATGGATACCTCAATCGACGATTTGTTT 603 Query 67657 CGTCTGGTTCAGGAATACCAACCACAAAACGTTGGTGTCGAAATTACAGGACAACAGAAT 67716 ||| ||||| |||| ||| | ||||| | ||| ||||| || ||||| || || ||| | Sbjct 602 CGTTTGGTTGAGGAGTACAATCCACAGAGCGTCGGTGTTGAGATTACTGGTCAGCAGGGT 543 Query 67717 GGATTCATCTCACTCCTTCA-GAAAGAAATGATTAACCGTAACGTCTTCTTTAACTTTGC 67775 || || ||| || | ||| | |||||| | |||| | | | ||| ||| |||| Sbjct 542 GGGTTTATC-CAATGGATCATGCGTGAAATGGATTACCGGAGTATTTACTTCAACCTTGC 484 Query 67776 TACCTCTGAGGGTGGTAAGCCAGGCATCCGTCCTGTAACCTCTAAGCTGTCACGCTTTAA 67835 | | || || |||| || || ||||| || | || ||| ||| | ||||| Sbjct 483 C-CAGCAGAAGG--GTAAACCGGGTATCCGACCCATGACAGATAAACTGAGTAGATTTAA 427 Query 67836 CCTGGTAGTTCCATGGTTCAAGGCTGGTAAGATGTATTTCCCGGAAGAGTTGAGAGATAC 67895 ||||| ||||| || |||||||| ||||| | ||||| ||| ||| |||||| Sbjct 426 TCTGGTTGTTCCTCTATTTAAGGCTGGAAAGATCAAGTTCCCCTTGGAGATGAAAGATAC 367 Query 67896 AACTATTATGGGGCTGTTCATGGGCCAGATTAAACTAGCTACCATTAATGGAATCAAAGG 67955 || |||| ||||||||| ||||| | ||||||| |||| | ||||| Sbjct 366 TCAAGTTCTGGGCTTGTTCATGGAACAGATCTCTTTGGCTACCAAAGATGGTTTGAAAGG 307 Query 67956 TAAGGATGACTGTATTGATACTATTTCCATGCTG 67989 |||||||||||| | ||||| || || ||| || Sbjct 306 TAAGGATGACTGCCTCGATACCATCTCTATGTTG 273 >seq76541 Length=11138 Score = 136 bits (150), Expect = 2e-27 Identities = 289/427 (68%), Gaps = 12/427 (3%) Strand=Plus/Plus Query 37624 CATATTCATGGGCATACCGGTTAACTGCATCTGAATAATGTCT-TCACAGGCTGGTTTAA 37682 ||| || ||||||||||| || |||||||| ||||| ||||| |||||| || || || Sbjct 294 CATGTTGATGGGCATACCCGTCAACTGCATTTGAATGATGTCGATCACAGCCTTTTTGAA 353 Query 37683 -AGAT----GTTGTTGTAAACATCCAGTTGGTCATCAGCAATGAGAGTATCCCAGTGCTT 37737 || | || | |||| ||| | | ||| | | || | || || || Sbjct 354 CAGCTCAACGTAGATGTAT---TCCTGATCGTCTGCGACCATCGTGGAATGA---TGTTT 407 Query 37738 CTCATAGGTGTACCAAGTACACAAACCATCAATGAGGTTGTAGCGTAACAGCTGTTCATT 37797 | ||| ||||||||| | | ||||| | ||||||||| || |||| | Sbjct 408 ATTGTAGACATACCAAGTAGATAGGCCATCCACGAGGTTGTATTCCAAGAGCTTTGGCAG 467 Query 37798 AGGAATAAGACGGATGTCTTTAATATCATCCTGAGCATAGTTACCAGCATACTCCTGAGC 37857 ||| || | |||||| | || || || ||||||||| || || |||||||||| Sbjct 468 AGGGATCTGCGTGATGTCATGGATGTCTTCAACAGCATAGTTTCCTGCGAACTCCTGAGC 527 Query 37858 CTGGTCTTTCAGACTAAGGTGATTACCAGCACAGCTGTTAGTAGCCAGGTAGGTGATTAA 37917 ||| | ||||||| | | ||||||||||| || || ||||| || ||||| | Sbjct 528 CTGAACCTTCAGACCCAACTCGTTACCAGCACATGAATTGGTGGCCAGATACGTGATGAG 587 Query 37918 CTTAGTACAGTCCCAATTACGTAGCATGATATCCATGCCATGCAGTAAGCCTTCTGTATC 37977 || ||||| ||||| || ||||| | || |||| || | || | || ||| || Sbjct 588 CTGTGTACATTCCCAGTTGCGTAGGAGGACTTCCAGACCTTCGAGCATTCCCTCTTGGTC 647 Query 37978 AATCAGGTTATCCATGAATAACTGATAGATGAGTACGTACACGTCATAGCTAATGTTGTG 38037 || | || |||||| || |||||||| || || || || |||||||||| |||||||| Sbjct 648 AAGGATGTGATCCATAAACAACTGATAAATCAGCACATAAACGTCATAGCAGATGTTGTG 707 Query 38038 ATACATC 38044 ||| ||| Sbjct 708 ATAGATC 714 >seq266624 Length=731 Score = 96.9 bits (106), Expect = 2e-15 Identities = 180/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 4939 AATGACCCAGATGCAAAACCAGGAAGCAGAATCATTAACAGGTGTTAAAGCATTCTCTGG 4998 || || |||| | || ||||| ||||||||| || | || || || ||| ||||||| || Sbjct 580 AACGATCCAGCTCCAGAACCAAGAAGCAGAAGCACTTACCGGGGTGAAATCATTCTCCGG 521 Query 4999 TGGTGTAACTGGTTCAGCTTATGGAGATGTGGCTGCTGGTATTCGTGGTGCACTTGATGC 5058 |||| | ||||| || ||||| || || ||||||| || ||||| || || | Sbjct 520 TGGTATTTCTGGTGATGCGTATGGTTCCGTTGCAACTGGTATCCGGGGTGCTCTGGACTC 461 Query 5059 AGCATCCAAACGTGAGATGGCAATCCTTCGTCGATTAGCTAAGGGTATGGCAGAT-ATTG 5117 |||| || |||||| || ||||||| | || || |||||| |||| || | Sbjct 460 TACATCTGTCCGGGAGATGAGCATTGTTCGTCGTCTGGCCAAAGGTATG-CAGAAGATCG 402 Query 5118 GTACTAAGATTTGTGCAATGAATGCCGTGTTCTTATCTGAGAAGGAAGTAGTACGTATTA 5177 || ||||| ||||||||||| |||||| ||| ||||||| || ||| | Sbjct 401 GTGAGAAGATCATCGCAATGAATGCTCAGTTCTTGGAAGAGCAGGAAGTTGTTCGTGGGA 342 Query 5178 CCAATGAACAATATGTAGAGAT 5199 | || ||| | | ||| || || Sbjct 341 CAAACGAAGAGTTTGTTGAAAT 320 >seq121189 Length=2370 Score = 86.0 bits (94), Expect = 3e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 49870 TGAAATAATACTTGAGCTATCCCAGAACCAGCCGGGATATGCAGTTTTTTACGACCATGA 49929 ||||||| |||||||| || ||| | || | |||||||| | | | ||| ||| Sbjct 1953 TGAAATAGCACTTGAGCAATTCCACATCCTGATGGGATATGTATACCCTCGCTACCGTGA 1894 Query 49930 TAGACCAATTCGAGGGTAAGATACCCTTTCCATCCTGGTTCGATTACTGTATTAAATACG 49989 || || | || | || | || |||||||| || |||||||| || || || || || Sbjct 1893 TAAACAAGCTCTAATGTTAAATGACCTTTCCAACCCGGTTCGATGACCGTGTTGAAAACA 1834 Query 49990 GATAATGCACGTCTTGCCCATGTAGACTTGTCGTGAACGATAGCCACACAG-GATGGTGA 50048 | ||||||| ||||| || || ||||||||||| | | ||| ||| | || Sbjct 1833 CTCAGCCCACGTCTGGCCCAAGTGGATTTGTCGTGAACAACA-CCAACCAGATCTACTGG 1775 Query 50049 CATGTTGAACTTCTCAATTGCTGAAGCCA 50077 ||||||||||| ||||| || ||||||| Sbjct 1774 CATGTTGAACTCTTCAATGGCCGAAGCCA 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231282789323256