Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019485.1 Length=59080 Score E Sequences producing significant alignments: (Bits) Value seq121188 84.2 8e-12 >seq121188 Length=15723 Score = 84.2 bits (92), Expect = 8e-12 Identities = 210/318 (66%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 53828 AAATTCTTTTTCCTCACAAGGGAATTTCTCACAAAGTGGGTATACGTTAACTACCCATGC 53887 |||| ||| || ||| ||| || | || ||| | ||| | ||||| || ||||||| Sbjct 955 AAATCCTTCTTA-TCAACAGGAAACTCCTTACACACTGGCCAAACGTTCACCTCCCATGC 1013 Query 53888 TCCGGATTCAACCGCTTCATATAAAATATCTCGCTTATTAAATGGAGTACCGTTGAATAT 53947 || || || | |||| ||| | || || ||| | || ||||| || || | || Sbjct 1014 ACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGTCCCATTCAGAAT 1073 Query 53948 AACCTTACGCTTAAGCGGACTTAATGCAGGTAGTACGCCTTTATACACAGTGTCATTGAT 54007 | ||| ||| | || | || | ||| || || || ||||| || || || Sbjct 1074 AGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT 1133 Query 54008 GGTAGCCATAGATGCCTTAGAGTTAGCATCCTCATCACTTACCAGATCATCCAGTACTGC 54067 | ||||| | | ||| || ||||| ||||| | || ||||| || ||||| Sbjct 1134 CTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGC 1193 Query 54068 TAATACAGGTCGTTTACCAAATATTTTGGAACCACGAATACCAGTCTTAGCACCAAACAT 54127 | ||||||||||||||| || || | |||||| ||||||| ||| ||||| ||||| Sbjct 1194 AAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCGAACAT 1253 Query 54128 CTTCAAGCCAAACTTATT 54145 | ||||||||||| Sbjct 1254 ACGGACACCAAACTTATT 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188286862296864