Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28030 190 4e-43 seq182767 118 2e-21 seq124498 86.0 1e-11 seq54887 86.0 1e-11 >seq28030 Length=5412 Score = 190 bits (210), Expect = 4e-43 Identities = 579/871 (66%), Gaps = 34/871 (4%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || |||||| | |||||||||||||||||||| || |||| || || || ||| Sbjct 1253 TGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTTCC 1312 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC-GTGTCAGGCCCATCTGTTCCAGCAG 47958 || ||| |||||||| | || || | | | | ||| | | || | | || || Sbjct 1313 ATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCA-AGCTCTACAAGGAG 1371 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATG-TTCATGCCTATGAGGG 48017 |||||||||| | | |||||| | |||| | | | ||||| || | | Sbjct 1372 TCGATCCGCGACAAATTTGATGTACTGCACCATG-GAATCACAATTCATTCCGAGCATTC 1430 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||| | ||||| |||||| ||||| |||| ||| ||||| || | || || | Sbjct 1431 GCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATTT 1490 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTT-GCGCAGGTGCTTGG-CATAGAGCATGCAGGC 48135 | | | || | | ||||| || || ||| || || || ||| ||| |||||| Sbjct 1491 CCGTGATCCGCTCCACAGAGGGCTTATTAGCG-AGATGTCTGAACAT-GAG---GCAGGC 1545 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | |||||||| || ||||| |||| ||||| ||| ||||| Sbjct 1546 AAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGG 1605 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || || ||||||||||| | || || || || |||||||| || || Sbjct 1606 CATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCC 1665 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCC 48314 ||||| ||||| || || ||| | |||||| || ||||| | | | ||| | ||| Sbjct 1666 TTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCG-TCC 1724 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT-GCATGGCATCGTCTCTATGGCCCGGAAG 48373 | | ||||| | |||||||| | || ||| || | | || | ||| ||| Sbjct 1725 ACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCA-GGGAAGTTGTCCAGGGCGTTAAAG 1783 Query 48374 A---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 | | ||| || || ||| | |||||| | |||| | || |||| Sbjct 1784 AGGCGACCCTT---TTCCTCTTTATCCTTGATATAGGTGTCAATGAGTA---ATGAGTAC 1837 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 || |||||||| | || || || |||| ||| || || |||||| | || ||| Sbjct 1838 ATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTA 1897 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 || || || || | || ||| | ||| | | |||||||| || || || || || ||| Sbjct 1898 ACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCA 1957 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC-ATTCC 48605 || || |||||||||||||| | ||||| ||||| | || | ||| || |||| Sbjct 1958 GCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCC 2017 Query 48606 AGCCCT---GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 || ||| || |||| || ||||| ||||| || ||||||||| || | | Sbjct 2018 CAATCTAGGGTA--TCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGG 2075 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 |||||||||||||| ||| ||||| || || Sbjct 2076 CTTTTTTGTACATGTTCCAGATGTCTGGGTA 2106 >seq182767 Length=2084 Score = 118 bits (130), Expect = 2e-21 Identities = 235/343 (69%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || ||| |||| || | |||||| || || ||||| || | | ||| | ||| || Sbjct 1700 AGATGATGGTTCACGACCTGGAACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAG 1641 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||| |||||||| ||||||||||||||| || ||||| ||| ||| ||||||||| Sbjct 1640 GTGTAGGCCTCGATGCCCTCGTTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATG 1581 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT-GAGGCGCCGAAGCTCTGC 213079 || |||| || || ||| | | || |||| |||| ||||| | || || | Sbjct 1580 GGCGCCAAGAGAAGGGAGTTGCGGAGGCCACTCTCGGCGATGGAGGC-CTTAATCTTGCC 1522 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTC-CTTCACGTTCCACATGTCAAACTGCAAGA 213138 ||||||||| ||| || |||| | ||| | ||| | || |||| | || Sbjct 1521 CCAGTCCCA-----GAGATCAGTGGGCGTCACGTCA--TCCCAGAGATCGTACTGAAGGA 1469 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 ||| |||||||||||| ||| ||| | ||||| || | ||| || |||| Sbjct 1468 GGCCCTTGCTCACGGGGGAACCCGAGTAGGTCTCATAGGGACCCTTCTCGGACGCAAGCT 1409 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATAT 213241 ||||| |||| || ||| ||||||| || ||||| || || Sbjct 1408 CGCAGCTGGCCTCCAATGCACCGTAGTAAATCGTTTCGAAGAT 1366 >seq124498 Length=1304 Score = 86.0 bits (94), Expect = 1e-11 Identities = 233/345 (68%), Gaps = 15/345 (4%) Strand=Plus/Minus Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 ||||||||| || || ||||| || ||| |||| |||||||| |||||||| || | Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 213589 TTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 | |||||| |||| || ||||||||||||||| || || | || ||||| | || | Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTTGCG 251 Query 213649 ACACCAGTATCTGGCT-CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 || | | || | || ||||| | ||| |||| ||||| | | ||| | Sbjct 250 ACTCAATGAT-GGCCTCCCAGATCTTTTGAGCCGGGACCTGTCGCCT-ATAATTCCCTTC 193 Query 213708 GTAGCCTCGTACTGTTCGTA-GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AG 213763 ||||| |||| ||| ||||| | || | | |||||| | |||| | Sbjct 192 --CGCCTCATACTTCAAGTACAAGCTC-TCAAAGGCCTCTCCCCAG---CAGTCCGCTAA 139 Query 213764 TCCCGGAC-AGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCA 213822 ||| || | ||||||| ||||| | |||||| | || || ||| || | || || Sbjct 138 TCCAGGGCTCTCATGCGGG-CACATCAAGCTCCAAACGCCATCCTCTTCCACACGCTTCA 80 Query 213823 TGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC 213867 |||| || ||||||| ||| || ||| ||||| |||||||| || Sbjct 79 TGAAGAGATCCGGGATCCAGAGGGCGTAGAACAAGTCCCTGGCCC 35 >seq54887 Length=4999 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 241479 CGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGC 241538 |||| ||| |||||| || ||||| || |||| | | | ||| ||||||||||| | Sbjct 2763 CGTTTTCATTTTTGAGCTGATTGACTTTATCGTCCAACTGGGAGATCCGTTCCAGTTTCC 2822 Query 241539 GCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGC 241598 || || || |||| ||| |||| ||| || ||||||||||| || || ||| || Sbjct 2823 GCTTCCGACACTTGGAGGCCGCCACGCGATTTCGGAGTCTCTTTCGCTCAAGCTTAATTT 2882 Query 241599 GTTCCTGGTCCTCCATGTCGATCGG 241623 |||||| |||||||||||| || Sbjct 2883 TTTCCTGTGACTCCATGTCGATGGG 2907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928172109117440