Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq121188 196 2e-45 seq282583 156 2e-33 seq76541 132 2e-26 seq266624 118 5e-22 >seq121188 Length=15723 Score = 196 bits (216), Expect = 2e-45 Identities = 778/1199 (65%), Gaps = 51/1199 (4%) Strand=Plus/Plus Query 67875 TTGGTTTCCATGGGTTGAGATACATGAGCATCGAGACGGTATCCAGGCAATCATCATGTT 67934 |||||||||||| ||| | | | | ||| |||| |||||| ||||| ||||| | Sbjct 248 TTGGTTTCCATGCGTTCATTTCTGTCAACATAGAGATGGTATCGAGGCAGTCATCCT--- 304 Query 67935 TACTCTTGAAGCCATTGACGGTAACCATCGTTAGCTCAGACATAAATTCGCCGATGATGT 67994 ||| || || |||| |||| ||| | | || ||| || ||| | || | Sbjct 305 TACCTTTCAAACCATCTTTGGTAGCCAAAGAGATCTGTTCCATGAACAAGCCCA-GAACT 363 Query 67995 TGCTGGT-TTTCATCTCTTTTGGGAAGTAAACCTTGCCGGCTTTAAAGAGAGGAACAACA 68053 || | ||||||||| ||||| | | ||| || || ||||| ||||||||||| Sbjct 364 TGAGTATCTTTCATCTCCAAGGGGAACTTGATCTTTCCAGCCTTAAATAGAGGAACAACC 423 Query 68054 AGTTGGAATCGGCTGTATTTATTGGACACCGGACGAATGCCTGCCTGGGTCTTGCCTTTC 68113 || | |||| || ||||| | || || || || || | || || || ||| Sbjct 424 AGATTAAATCTACTCAGTTTATCTGTCATGGGTCGGATACCCG-----GT-TTACCCTTC 477 Query 68114 TCAATGGCAAAGTTGAACCAGATGTTACGGTTCATCTGCTCGTTGCG-GAGCCACTGAAT 68172 | ||||| |||||| | || | |||| ||| | || || ||| || || Sbjct 478 TGCTGGGCAAGGTTGAAGTAAATACTCCGGTA-ATCCATTTCACGCATGATCCATTGGAT 536 Query 68173 AAATGCACCCTGCTGCCCGGATGTCTCAATGCCTACAGCCTGGGGCTGGTATTCGCTCA- 68231 ||| |||||||||| || | |||||| || || ||| || | ||| || |||| Sbjct 537 AAACCCACCCTGCTGACCAGTAATCTCAACACCGACGCTCTGTGGATTGTACTC-CTCAA 595 Query 68232 CCAGACGGAACAGTTCATCAATCGACTTGTCCATCGTCTGGCGGGCGCATACTCCATCCA 68291 ||| ||| |||| || || || || | ||||| ||||| || || || || || || | Sbjct 596 CCAAACGAAACAAATCGTCGATTGAGGTATCCATTGTCTGTCGAGCACAAACACCGTCAA 655 Query 68292 CCCAGAACCAGTCACCGTGGGCATTATAAGCCCAAACAGAAATGACTGAGAAGTCTGCGG 68351 ||||| ||| || || | | | ||| ||||| || || || || | || || | Sbjct 656 CCCAGTGCCAATCCCCATTCGAGTCATACGCCCATACTGATTGTACGGAATAATCCGCAG 715 Query 68352 TTTCCTTGTCTGAGGTGGCGAAGTCCGTGGTGATGTAGAAGTTAAACTTGCCCTGGTTCT 68411 ||| || || ||||| ||||| |||||||||||||| ||| | | || |||| Sbjct 716 TTTGTTTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCG 775 Query 68412 TCAGCAGGTTCTTCCGCTCATACCACTGGATGTCGTCGTCCTGAATAATACGCTCCTCGT 68471 || | || ||||| | |||| |||||| | ||||||| | ||| ||| | Sbjct 776 CAAGGATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCAT 835 Query 68472 CGGACGAGATGCGCAGCATCAGCTCCTGGTTGAATGCCGCCAGCTTCCC--GTT-CTTCA 68528 | | || || ||||| |||||||| ||| | | | || || || ||| ||| | Sbjct 836 CATCCTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGCTTGA 895 Query 68529 GGGACGTCTCGTATTCATCGAGGATGAACT---CATAGGTGAAGCGGTCTTCCCAGGCTC 68585 | | ||||| || || | |||| | ||||| || || ||| ||| ||| Sbjct 896 AGAAG---TCGTAATCCTCTT---TCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTG 949 Query 68586 CCCGGAATTC-TTCCCGGCTGCAGGGGAACTTCTCACAAATGGGCCATACGTTGACGTGC 68644 |||| || ||| | |||| |||| || ||| | ||||| ||||| || | | Sbjct 950 GTTGGAAATCCTTCTTATCAACAGGA-AACTCCTTACACACTGGCCAAACGTTCACCTCC 1008 Query 68645 CAGCCGCCGGATTCGACTGCCTCATACAGGATGTCGTTCTTGTTGAACGGCGTACCGTTG 68704 || | || || |||| ||| | ||||| |||||||||||||| ||| || || || || Sbjct 1009 CATGCACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGTCCCATTC 1068 Query 68705 AAGATGATTTTGCGGCGGGT-TGGGTCGAGGGCGTAGTTGACACCCTTGTACACCGTGTC 68763 | || | || | | | ||||| || |||| || | ||||||||| || || || Sbjct 1069 AGAATAGTCTTT-GACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATC 1127 Query 68764 CTTGATGGCTCCCATCGCTGCCTTGGA--CTTAGCGTCATCATCCGACACCAGGTCATCC 68821 || || ||||||| | ||||| ||| || || ||||| || | || |||||| Sbjct 1128 GTTAATCTTCGCCATCGCAG--TTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCG 1185 Query 68822 AGGATGGCCATGACCGGACGCTTGCCGTAAATCTTCGTACCACGGAGACCGGTCTTCGCA 68881 || | || | || || || || | |||||||||||||||| ||| | ||| ||| Sbjct 1186 AGAACTGCAAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCA 1245 Query 68882 CCGAACATCTTGATGCCCAGGCGGTGCCCGTTTCGGTTGGTGAACTCGATGTAGTTGTCC 68941 |||||||| || || | | || | | | ||||||| |||||||| || Sbjct 1246 CCGAACATACGGACACCAAACTTATTCCNNCTAC----GTTGAACTCCATGTAGTTCTCT 1301 Query 68942 GT-----GAACTTC-GCCTGAGGCAACCAGTGCTGGAGCCAATCGCTGTTGTTGTAGCGG 68995 || |||| | || | |||| |||||||||||| | || || || | | Sbjct 1302 GTGATCCGAACCCCAGCTTCTGGCATCCAGTGCTGGAGAAACTCCGAAGAGTCATAAC-G 1360 Query 68996 AACTCCAGGTT---CTGACGAGCCGACTTCACGCCGTTATCCATGGAGTCCGAGACATA 69051 | || || | || |||||| |||||||| || || |||||||||||||| | ||| Sbjct 1361 AGATC--GGATCGACTCACGAGCGGACTTCACACCATTGTCCATGGAGTCCGAAATATA 1417 >seq282583 Length=1909 Score = 156 bits (172), Expect = 2e-33 Identities = 234/330 (71%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 26110 TATGACGGTCACTGCCTGCGGGCACATGCTTACTTCGGTGAGCACATGCCGGACATCGAC 26169 ||||| ||||||||||| || || | |||| || || ||| ||| || |||||| Sbjct 1444 TATGATGGTCACTGCCTACGAGCTTACTCTTATTTTGGAGAGGTTATGGGTGATATCGAC 1385 Query 26170 TTTGAGTCAGTGGATAGCATCAACTCCATCGACAAACTGTATAAGGACTGGCGCCAGAAG 26229 | ||||| |||||||||||||| || | || || ||| | | | || | Sbjct 1384 CCTACTTCAGTCGATAGCATCAACTCGATTGCGAAGAAATACAAGCAGCAGAGACAAGAC 1325 Query 26230 TCGAAGGCACCAACCTTTGCACTGACCTACCAGGGAACCTACTCCACGCTGATGAACAAC 26289 || || || |||||||| |||||||| || |||||||| ||| || |||||||||||| Sbjct 1324 TCTAAAGCTCCAACCTTCGCACTGACATATCAGGGAACTTACATGACCCTGATGAACAAC 1265 Query 26290 TGTGGCTTCAGCAAAGAGTTGGC-CATGCAGGTTGAGGCCAGGTATCACGAGCTTTATGT 26348 ||||| |||||||| || ||||| || ||| ||||| | || | || | || || Sbjct 1264 TGTGGTTTCAGCAAGGAATTGGCTCAAGCA-ATTGAGAACGCATACAAGAAGATGTACGT 1206 Query 26349 CGTGAGTACCCAGTGGGTGAAAGACAAGCTGGAGCAAGCCTGCAAAGACGGTTACGTCAC 26408 || | | | |||||||| ||| ||||| |||||| ||| || || ||| |||| Sbjct 1205 GGTCTCGATCAACTGGGTGAATGACCGACTGGAACAAGCCACCAAGGATGGCTACATCAC 1146 Query 26409 TGCGGCGTTCGGTCTGCGAGTCAGAACCCC 26438 || ||| |||||||| |||| ||||| || Sbjct 1145 TGTGGCCTTCGGTCTCAGAGTGAGAACACC 1116 >seq76541 Length=11138 Score = 132 bits (146), Expect = 2e-26 Identities = 207/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 25045 TATGACGGTTATGTGCTGGTGTACCAGTTGTTCATGAAGCACCTGCTCGACACGGAAGGT 25104 ||||||| |||||||||| | || |||||||| ||| | ||| | || ||| || || Sbjct 695 TATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATCACATCCTTGACCAAGAGGGA 636 Query 25105 TTACTGACCGGTCTGCGGATAATGCTCAGGAACTTCGATGACACCCTGCTCATCACGTAT 25164 | || |||||| | | || | |||| || || | ||||||||||||| Sbjct 635 ATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAATGTACACAGCTCATCACGTAT 576 Query 25165 CTGGCCACCAACAACTGTGGTGGTAATGAACTGGGCCTCAAAGCTCAGAGTCAGGAGTTC 25224 ||||||||||| |||| |||||| || |||| || || | |||| |||||||||| Sbjct 575 CTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAGGAGTTC 516 Query 25225 ACCGGCAACTATGCGGTGGAGGACATCGACGACATTACCAAAATCCC----CAAAAAGGA 25280 | || |||||||| || || |||||| | ||||| || | ||||| | ||| | Sbjct 515 GCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCAGATCCCTCTGCCAAA--GC 458 Query 25281 TTTGCTGCAGTACAACCTCATTGATGGCCTGGCCACCTGGTACGTGTACAACAA 25334 | | || | ||||||||| | |||||||| | || ||||| || ||||| || Sbjct 457 TCT--TGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATGTCTACAATAA 406 >seq266624 Length=731 Score = 118 bits (130), Expect = 5e-22 Identities = 300/454 (66%), Gaps = 2/454 (0%) Strand=Plus/Plus Query 57395 ACGGATGTTTTCTGCCAGCGCCGGCATACGTTTCAGGTCAGCAATCTCACCCAGAATCAT 57454 ||| || | ||| |||| | | |||||||| || ||||||||||||| |||||||| || Sbjct 124 ACGAATTTGTTCAGCCAACTCAGGCATACGCTTGAGGTCAGCAATCTTACCCAGAACGAT 183 Query 57455 ATTGGTGATGGAG-GCATCCATGTTTGGCCCAATGGTCTGCAGCATAAAGCCCAGGTCTT 57513 | | || | | | |||||| | || |||| ||||| || | | || || || | Sbjct 184 CT-GACGAAGCATCGGATCCATATCAGGACCAACAGTCTGAAGAACCATACCAAGATCAT 242 Query 57514 GAGCCTTGGCGTTATCAATCTCTGCAGTGGAGATGTCCACTTCCAGGTCGAACTGACCTT 57573 || || | ||||| || |||||||| || || | |||||| || | ||| Sbjct 243 TGGCTTTCTGTTCATCAACTGAGGCTGTGGAGATATCAACCTTCAGGTCAAAGTTACCAG 302 Query 57574 TCAGGTCTTCACGCTCAACCGGTACGAAATCACGGTTAGTGACACGGATGACTTCTTTGT 57633 || || ||| | || || || ||| || |||| | ||||| | | Sbjct 303 CCAACTCAGAACGAGAGATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCT 362 Query 57634 CAGACAGGAAGGCATAGTTCATCGCAATGAGCTTGGCGCCAATGTCTTTCATACCTTTGG 57693 | || ||| | ||||| || |||| ||| | || || | | ||||||||||| Sbjct 363 CTTCCAAGAACTGAGCATTCATTGCGATGATCTTCTCACCGATCTTCTGCATACCTTTGG 422 Query 57694 CCAGACGGCGGAGGATTGCCATCTCACGTTTGGACGAGGCATCCAGAGCACCACGAATAC 57753 ||||||| || | || |||||| || || | | ||||||||||| || |||| Sbjct 423 CCAGACGACGAACAATGCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATAC 482 Query 57754 CGGCCGCTACGTCACCGTAAGCTGAGCCAGAGATACCACCAGCAAATGCCTTCACACCAG 57813 | | || ||| ||| || || ||||| |||||||| | |||| ||||| || | Sbjct 483 CAGTTGCAACGGAACCATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGG 542 Query 57814 TCAGCGATTCAGCCTCTTGGTTCTGGAGCTGCAT 57847 | || | ||| || ||||||||||||||||| || Sbjct 543 TAAGTGCTTCTGCTTCTTGGTTCTGGAGCTGGAT 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237975962928880