Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq287714 107 1e-18 >seq287714 Length=1605 Score = 107 bits (118), Expect = 1e-18 Identities = 184/264 (70%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 78366 TGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCCG 78425 ||||| | ||||||||||| || || | || |||| || || |||||||| | | Sbjct 1336 TGATTATGATAAATATGAGCATCGCCAAACGTATGAACAAAATCGCCTACTTCTAAATCA 1277 Query 78426 CACAAATGCGCAATAAT-ATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 || | ||||| | || ||| ||||| | || || || ||||| ||||| || | || Sbjct 1276 CAAACTTGCGCTAACATCATG-GTAAGAAGCGCATAAGAGGCAATATTAAACGGCACACC 1218 Query 78485 TAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATAC 78544 |||||| | || | |||||||| | ||| ||| | ||||||||| | || Sbjct 1217 TAAGAAGATATCCGCAGAACGTTGGTAAAGTTGACAAGACAACTTTCCATCCGCC---AC 1161 Query 78545 GTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGATT 78604 |||||||| || | || ||||||||||| | ||||||||||| | ||| || || Sbjct 1160 ATAAAACTGAAACATCGTATGACAAGGCGGCAAGGCCATATCATCAACCAAAGCTGGGTT 1101 Query 78605 CCAAGCAGACACAATATGTCTGCG 78628 |||||| |||||||||| ||| Sbjct 1100 CCAAGCGCTAACAATATGTCGGCG 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299104184948800