Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq14098 150 6e-32 seq287714 107 6e-19 >seq14098 Length=52687 Score = 150 bits (166), Expect = 6e-32 Identities = 383/572 (67%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 |||||||||||| ||||||| || | || ||||||| ||| |||||| |||| Sbjct 21732 ATGAAACAATATTTAGACTTATTGGCGCATATTCTAGAAAATGGCACAGAGAAATCAGAT 21791 Query 45497 CGGACGGGAACAGGCAC--ATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGG 45554 | ||||| ||||| || | || || || || | ||| |||| ||| | || | Sbjct 21792 AGAACGGGTACAGGTACTAAAAGT--GTATTTGGTCATCAAATGCGATTTGATTTAACAG 21849 Query 45555 ACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGC 45614 | ||||| || | | || || ||||| | ||| | | || || ||||| ||||| | Sbjct 21850 AAGGATTTCCTTTATTAACAACTAAAAAACTTCATTTGCATTCTATTATTTACGAACTAC 21909 Query 45615 TCTGGTTTTTAAAAGGCGATACGAATGTTCGC-TATTTGCAGGAGAATGGTGTGACGATT 45673 | |||||||| ||||| ||||| ||| ||| ||| | | ||||||| || | ||| Sbjct 21910 TTTGGTTTTTGAAAGGTGATACTAAT-ACCGCTTATCTAAAAAAGAATGGGGTTAGTATT 21968 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || ||||| ||||| || || ||| | || || | || || ||||||| | Sbjct 21969 TGGGATGAATGGGCTGATGATAAGGGTGATTTAGGTCCGGTATATGGTAAGCAATGGAGA 22028 Query 45734 TCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATC 45793 ||| |||| ||| | || || | | || |||||| | ||| || || |||| Sbjct 22029 AGTTGGCAAGGTGCTAATGGACAAGTGATTGATCAAATTTCTCAGGTGTTAGAGCAAATT 22088 Query 45794 AAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGG 45853 || | ||| | || | | || |||| | ||| |||||||| | | || | Sbjct 22089 AAAAATACCCCAGATTCTAGAAGAATGATTGTTAACGCTTGGAACGTTGGTGAATTAGAT 22148 Query 45854 GAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTG 45913 || ||| || | || |||||| | || || ||||| || || ||||| | ||| Sbjct 22149 GATATGGCTTTATCTCCCTGTCATGCCTTGTTCCAATTTTATGTAGCAAATGGACAATTG 22208 Query 45914 TCATG-CA--TGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATC 45970 || || || | | ||| || | |||| ||| ||| ||||| |||| ||||| || Sbjct 22209 TCTTGTCAGCTTTACCAA-AG-ATCCTGT-GATGTGTTTTTAGGACTGCCTTTTAATATT 22265 Query 45971 GCTAGCTATGCGCTGTTGACACATATGGTTGC 46002 ||||||||||| ||| ||||| | ||||| || Sbjct 22266 GCTAGCTATGCTCTGATGACAGAAATGGTGGC 22297 >seq287714 Length=1605 Score = 107 bits (118), Expect = 6e-19 Identities = 394/607 (65%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || ||||| ||||| ||| || || || || | |||| |||| ||| || | Sbjct 759 GACCGTACGGGCACAGGTACACGTTCTGTCTTTGGGCATCAGATGCGGTTTGACCTAAGT 818 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 | || || || | ||||| || || | || | || || || ||| |||||| Sbjct 819 AAAGGTTTTCCTGTTACCACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGAACTG 878 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 | |||||||| || | ||||||||| | |||||||| || || || | ||| Sbjct 879 TTATGGTTTTTGCGTGGTGGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTCTATT 938 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || ||||| ||||||||||| ||||| || || | || || ||||||||| Sbjct 939 TGGGATGAATGGGCAGATGAAAACGGTGATCTTGGTCCTGTTTATGGGTATCAATGGCGG 998 Query 45734 TCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCT--TTAAGGAAA 45791 || ||| | |||| || || | || ||||| ||||| ||||| Sbjct 999 TCTTGGCCAACACCTGATGGTGGAAGCATTGATCAAAT--AAAAGGTCTTGTTAAGAGCC 1056 Query 45792 TCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGG 45851 | || || || || ||||| || |||| ||||| |||||| || | | | Sbjct 1057 TTAAAGAAAATCCAAATTCGCGCCGACATATTGTTAGCGCTTGGAACCCAGCTTTGGTTG 1116 Query 45852 GGGAAATGAAGTTGCCCCCATGTCATTACG-CCTTTCAGTTTTACGTCGCGAATGGCCGG 45910 || ||| ||||| || ||||| |||| ||||||||||| || ||| |||| | Sbjct 1117 ATGATATGGCCTTGCCGCCTTGTCA-TACGATGTTTCAGTTTTATGTGGCGGATGGAAAG 1175 Query 45911 TTGTCATG-CATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACAT 45969 ||||| || || | | || ||||||| |||| || |||| |||||||||| || Sbjct 1176 TTGTCTTGTCAACT-TTACCAACGTTCTGCGGATATCTTCTTAGGTGTGCCGTTTAATAT 1234 Query 45970 CGCTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCAACAATGCGACCTCGATGTCGGCG 46028 || |||||||| | || ||| ||| | || ||| || || | || || |||| Sbjct 1235 TGCCTCTTATGCGCTTCTTAC-CATGATGTTAGCGCAAGTTTGTGATTTAGAAGTAGGCG 1293 Query 46029 AACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAAC 46088 | | || || ||||| | ||| | || | ||||| | |||||||| ||| Sbjct 1294 ATTTTGTTCATACGTTTGGCGATGCTCATATTTATCATAATCACTTTGAACAAGCCAAAG 1353 Query 46089 TGCAGCT 46095 |||||| Sbjct 1354 AGCAGCT 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157209739687824