Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq256083 86.0 1e-11 seq14098 84.2 3e-11 >seq256083 Length=796 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 122411 GAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTT 122470 || ||| |||| || ||||| || || || | || | || || |||||||||||| Sbjct 590 GATAAATCAGATCGCACGGGTACTGGAACGCGTTCAGTTTTTGGTTATCAAATGCGCTTT 649 Query 122471 GACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATC 122530 ||| |||| |||| || ||| || | || || |||||| | || | || ||||| Sbjct 650 GACTTGCAGGAAGGATTTCCGGTGCTTACCACGAAAAAGCTGCATTTAAAATCGATCATT 709 Query 122531 CATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAAC 122590 |||||||| ||||||| | || ||||||||||| ||||| || | || Sbjct 710 CATGAGCTGTTGTGGTTTTTACAAGGTGATACCAACATTGCCTATCTCAACAAGCACGGT 769 Query 122591 GTCAGTATCTGGGATGAATGGGCAGAT 122617 || ||||||||||||||||| ||| Sbjct 770 GTTTCCATCTGGGATGAATGGGCTGAT 796 >seq14098 Length=52687 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCAC-GAAAAAGCAGA 122421 |||||||||||| | |||||| || | ||| || || || ||| || ||| |||| Sbjct 21732 ATGAAACAATATTTAGACTTATTGGCGCATATTCTAGAAAATGG-CACAGAGAAATCAGA 21790 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 | ||||| || || || |||| || |||||||| ||||| | | | Sbjct 21791 TAGAACGGGTACAGGTACTAAAAGTGTATTTGGTCATCAAATGCGATTTGATTTAACAGA 21850 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||| || || | | || || ||||| |||| | | || || || | || || || Sbjct 21851 AGGATTTCCTTTATTAACAACTAAAAAACTTCATTTGCATTCTATTATTTACGAACTACT 21910 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||| | | || ||||| || | | ||||| ||| | || || ||||| || Sbjct 21911 TTGGTTTTTGAAAGGTGATACTAATACCGCTTATCTAAAAAAGAATGGGGTTAGTATTTG 21970 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||||||||||| ||||| | ||| || | || ||||| || |||||||||||| Sbjct 21971 GGATGAATGGGCTGATGATAAGGGTGATTTAGGTCCGGTATATGGTAAGCAATGG 22025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774826537033600