Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq11950 84.2 2e-11 >seq11950 Length=2906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || ||||| || ||| || | || Sbjct 660 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTC 719 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | ||||| || || ||||| |||||| | ||| |||||| Sbjct 720 AGACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 779 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || || || || ||||| || | || || | || || |||| ||||| Sbjct 780 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAA 839 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| || |||||||| ||| |||| | ||||| ||||||| || Sbjct 840 CATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGGAAT 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423908435425464