Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq209393 196 3e-44 seq78081 118 7e-21 seq11950 116 2e-20 seq8149 104 2e-16 seq287765 95.1 8e-14 seq281672 95.1 8e-14 >seq209393 Length=1576 Score = 196 bits (216), Expect = 3e-44 Identities = 386/562 (69%), Gaps = 28/562 (5%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || || || ||||||||||| |||||| ||||| | || | || |||| ||| Sbjct 524 GCTATCGGGATCGATTTAGGAACGACTTACTCCTGTGTGGGAGTATTTCAGCATGGAAAA 583 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||| || ||||| ||| |||| || || || ||||| ||||||| Sbjct 584 GTGGAAATCATTGCCAACGATCAAGGGAATCGAACGACGCCGTCTTATGTCGCTTTTACA 643 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGTTAA 474507 || |||| | ||||| |||||||| || || |||||| ||| ||| ||||| ||| Sbjct 644 GACACTGCAAGACTTATAGGAGATGCAGCCAAGAATCAAGTTGC-TCTGAATCCAAGTAA 702 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCG-TAATTTT--GATGATACCACTGTCCA 474564 ||| | |||||||| |||||| ||||||| | |||| | || || ||| || Sbjct 703 TACCGTCTTTGATGCCAAAAGACTGATTGGCAGACAATTCTACGACGAAACC---GTTTC 759 Query 474565 ATCTGATATGCGTCATTGGCC-TTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | || | |||||||| || |||| ||| || ||||| || || ||| || Sbjct 760 ACAGGACAAAAAGCATTGGCCATTCTAAGTTGA-GAACGTTGGGGGCAAGCCA-----AG 813 Query 474624 AAGCAAT-----ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 || |||| || | |||| || || |||| | || ||| |||| ||| | || Sbjct 814 AATCAATGTCGAGTACAAATGTGAGACAAAGTCATTTACGCCAGAAGAAATCTCTGCCAT 873 Query 474679 GGTTTTAGCCAAAATGAAACAAACCGCGAGCTC----ATATCTTGGACAAGAAGTAACTG 474734 ||| | |||||||| ||| ||||| ||| || ||| || || | | Sbjct 874 GGTACTGAGTAAAATGAAGGAAA----TAGCTCAGGAATACCTCGGAACCGAGGTCAGAG 929 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || ||||| || ||||| || || ||||| || || | Sbjct 930 ATGCCGTTGTCACTGTTCCCGCCTACTTTAACGACTCTCAGCGGCAGGCAACGAAGGACG 989 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| || ||||| ||||| || | || || || ||||| || || || |||||| Sbjct 990 CTGGACACATAGCAGGGCTTAACGTACTTCGCATCATCAATGAGCCCACTGCGGCCGCAA 1049 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || ||||| Sbjct 1050 TAGCCTATGGGCTCGACAAGAA 1071 >seq78081 Length=4256 Score = 118 bits (130), Expect = 7e-21 Identities = 120/154 (78%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || |||||||| ||||| || | ||| |||||||| ||||| ||||| ||||| Sbjct 3009 ATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGAGGGATTCCCTCCTT 3068 Query 480677 GTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 ||||| || ||| || || ||| ||| || ||||||| | | | || ||||||| Sbjct 3069 ATCTTGGAT-TTTGGTCTTAACATTTTCGATGGTATCAGAGGGCTCAACCTCGAGGGTAA 3127 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||||| ||||| |||||||||||||| || Sbjct 3128 TGGTTTTACCCGTGAGGGTCTTAACGAAAATCTG 3161 >seq11950 Length=2906 Score = 116 bits (128), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || ||||||||||| ||| ||| || || ||||||||||| || || | || Sbjct 644 AGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCC 585 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || || ||||| ||||| ||||| ||||| || ||||| || |||||||| ||||||||| Sbjct 584 TCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 525 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 |||||||| ||||| ||||| || || | | | || || || || ||| Sbjct 524 TGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTT 465 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| ||||| ||||| Sbjct 464 TTGCCAGTTAGAGTCTTGACGAAGATTTG 436 Score = 113 bits (124), Expect = 3e-19 Identities = 119/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || | ||| || ||||| || ||||||||||| || Sbjct 1272 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTT 1213 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| |||||| ||||||||| |||| || | || ||||| |||| Sbjct 1212 GTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAA-CCTCAAGAGTAA 1154 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || ||||| ||||| |||||||| || Sbjct 1153 TGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTG 1120 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| | || || |||||||| || ||| || || || ||||| | ||||| Sbjct 426 ACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGT 367 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||||||||||||||| ||||| || ||||| |||||||| || || ||||| Sbjct 366 ACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCC 307 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || || || ||||| ||||| ||||| || || | | | || || Sbjct 306 TTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAG 247 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || |||||||| ||||| ||||| Sbjct 246 TGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTG 208 Score = 109 bits (120), Expect = 4e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| | || ||||||||||| || ||| || || ||| || || | ||||| Sbjct 197 CGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTA 138 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| ||||| ||||||||||| |||||||| || || || || || |||||| Sbjct 137 CGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCT 78 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||||||||||| ||||| |||||| ||||| ||||||| Sbjct 77 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAG 35 Score = 102 bits (112), Expect = 5e-16 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTC 480612 ||||| || || | ||| ||||| ||| | ||| || || || || | | |||| Sbjct 1106 AGACGAAGAACTAAATGCAAAGTGGACTCTTTTTG--AATGTTGTAGTCCGACAAGGTTC 1049 Query 480613 TGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTT 480672 | ||| ||||||||||| ||||| || || | ||| || || || || |||||||||| Sbjct 1048 GGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTT 989 Query 480673 CCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGG 480731 |||||||||||||||| || ||| |||||| || || | || | || ||||| Sbjct 988 CCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAA-CCTCAAGA 930 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| || || || Sbjct 929 GTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTG 892 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| ||||| ||||| || ||||| || |||||||| |||||| Sbjct 815 TCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTG 756 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| ||||| ||||| || || | | | |||||| || || Sbjct 755 TCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGATG 696 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || |||||||| Sbjct 695 GTCTTTCCAGTAAGGGTCTTGACAAAAATTTG 664 >seq8149 Length=3078 Score = 104 bits (114), Expect = 2e-16 Identities = 184/266 (69%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||||||||| |||||||| |||||| ||||| | ||| | || | || || |||| Sbjct 1446 TTGGTATTGACTTAGGAACGACTTACTCCTGTGTGGGTGTCTTCCAGCACGGCAAGGTAG 1387 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||||||||| || || |||| || || || ||||| | ||||| || | Sbjct 1386 AGATCATCGCCAATGACCAGGGGAACCGAACCACGCCTTCCTATGTGGCCTTTACGGACA 1327 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGTTAATACT 474511 | || | ||| || || ||||| || || | |||| | |||| || || || || Sbjct 1326 CGGAGCGTCTCATCGGTGATGCCGCCAAGAACCAAGTGGCCATC-AACCCCACCAACACC 1268 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || ||||| || || || | ||||| || || || |||| || | || || || Sbjct 1267 ATCTTTGACGCCAAGCGACTCATTGGCCGCAAGTTCAATGAGGCCGCCGTTCAGGGCGAC 1208 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGAT 474597 ||| |||||||| || | ||||| Sbjct 1207 ATGGAGCATTGGCCATTCACTGTGAT 1182 >seq287765 Length=760 Score = 95.1 bits (104), Expect = 8e-14 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 297326 TAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTTGAAA 297385 ||||| |||||| || |||||||| |||||||| | ||| |||||||||||||||| Sbjct 281 TAGATGTTTGGTTCGATTCAGGTTCAATGCCTTACGCACAATGGCATTATCCTTTTGAAA 340 Query 297386 ATTCCGAAATTTTAGACACTTCACA-AGATTATATT--GCAGATTTTATAACAGAATCAA 297442 | ||| | |||| | | | | ||| ||| ||||||||||| | ||| | Sbjct 341 ACAAAGAATTAATAGA---TGAAAATAAATTTTATCCAGCAGATTTTATTGCCGAAGGAG 397 Query 297443 TTGATCAAACAAGAGGTTGGTTTTATACTTTA 297474 | |||||||||||||||||||| ||||||||| Sbjct 398 TAGATCAAACAAGAGGTTGGTTCTATACTTTA 429 >seq281672 Length=1211 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || |||| ||| ||||||||||||| |||| | |||||||||| || Sbjct 506 CCATCACGACCCGCTCGACCAGTTTCTTGATAATACGCTTCTAGATTTTTAGGTAAATCA 565 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 |||| || || |||||| | ||||| ||||||||| |||||||| | || ||| Sbjct 566 AAATGCGCAACAAATCGCACATCAGGTTTATCAATACCCATACCAAATGCCACAGTAGCA 625 Query 627889 ACCATTATATTTACTTT 627905 ||||| || | || ||| Sbjct 626 ACCATAATTTGTATTTT 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3255799059395168