Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020839.1 Length=39573 Score E Sequences producing significant alignments: (Bits) Value seq83801 158 3e-34 seq273771 82.4 2e-11 >seq83801 Length=1216 Score = 158 bits (174), Expect = 3e-34 Identities = 337/491 (69%), Gaps = 12/491 (2%) Strand=Plus/Plus Query 30817 TCCCAGGGCGCGTCGAAGGCCTTGCGCTTCGAGAA--GCGCATGTAGGTCTTCGACCCGA 30874 |||||| | ||||| | | || || | ||| || ||||| || ||| || |||| Sbjct 403 TCCCAGCGGGCGTC--ATGGCTGGCACGCCGATAACAGCGCACATACCGCTTGGAGCCGA 460 Query 30875 TCACCCGGATCGCATCGCGGATCGCGCGCATCGCCT-CCTGCCAGCGCGGGTCCTCGATC 30933 || || || || ||||| || || || | |||| |||||||||| || |||||| | Sbjct 461 CAACGCGCATGGCCTCGCGAATGGCACGT-TGGCCTTCCTGCCAGCGGGGATCCTCGCTG 519 Query 30934 TCGAGGCGCAGCAGCATGAAGACTTCG-GAGCGGTTGATCTGGCCTTCCTTGTCGGTGTT 30992 || |||||| ||||| |||| | || ||||||||||| | || ||||||||| | Sbjct 520 TCTTGGCGCAAAAGCATAAAGA-TGCGAGAGCGGTTGATGTTCCCCGTCTTGTCGGTTTG 578 Query 30993 GAAGGCGCGCGTGACGATCGCACGGATCTCGGGACGGCTGTCGGCCGCCCATTCGTTCAG 31052 ||| || ||| || | || || | ||| || || ||| || |||||||| |||| Sbjct 579 GAACGCATTCGTCACCAAGGCCCGCAGCTCTGGCCGCGCGTCCGCAGCCCATTCAGTCAG 638 Query 31053 ACACTCGTCGATCAGTCCCTTCGCAACCTGCAGCTCGGGGCCGAAGGTCA-GCAGATCGG 31111 || ||||| | || |||| || | ||| ||||| ||||||||||| | | || || | Sbjct 639 GCATTCGTCAAAGAGCGCCTTGGCGATCTGAAGCTCTGGGCCGAAGGTGATGTAG-TCAG 697 Query 31112 AGACGCGAACCTCGATCTTGAAGAGGCCGTCATGGGTCAAGTAG-GTCTTGTTGCCCTTC 31170 | || | |||| | |||||| | ||||| ||| | || || || |||||||| Sbjct 698 AAACCTGCACCTGAACCTTGAACAATCCGTCGACAGTC-TGAAGCGTTTTATTGCCCTTA 756 Query 31171 GCGCCGCCGATCTTGAGACCATATTCCTGGGCGAGCATCGCATCGAGATCTCCGAGATCG 31230 || ||||| | ||| |||||||| | || || || || | | || | ||| Sbjct 757 GCACCGCCCAGTTTGGTGTTGTATTCCTGCTCAAGAATGGCCTCATGGCCCCCAATGTCG 816 Query 31231 TCGAAGGTATGCCCCTTGAACCGCGCGACCTGGTCACTGAGCGCCAGCGCAAATCCGAAG 31290 || |||||||| | |||||||| || | ||| || || || || |||| |||| | Sbjct 817 TCAAAGGTATGTTCTTTGAACCGGGCCATCTGATCTGACAGGGCAAGGCCAAAGCCGAGG 876 Query 31291 ATCTTGCGCAC 31301 || |||||||| Sbjct 877 ATGTTGCGCAC 887 >seq273771 Length=2308 Score = 82.4 bits (90), Expect = 2e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14088 TAGGCCATTTGCCAGAACCCGAAGCCGACATTGGCGCGGGCATCCGTGCCATAGAGGAAT 14147 |||||||| ||||| | || ||||| |||||| ||||| |||| ||| ||||||||| Sbjct 1890 TAGGCCATCTGCCACAGGCCAAAGCCAACATTGCAACGGGCGTCCGCGCCGTAGAGGAAT 1949 Query 14148 TCCTTGTTCATGAAGACGTGGTC 14170 ||||| ||| |||||||||| || Sbjct 1950 TCCTTTTTCTTGAAGACGTGATC 1972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126078403524720