Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq244135 82.4 4e-11 >seq244135 Length=507 Score = 82.4 bits (90), Expect = 4e-11 Identities = 129/183 (70%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 24963 TCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTC 25022 |||||||||||| |||||||| | | ||||| |||| | ||||||||||| Sbjct 317 TCCAAAGATTAAGCGCCACAAGATCTTCCAGAAGATGTTTGTTTACAACAATAAATTCTC 258 Query 25023 CAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATT 25080 | || | || | | ||| ||| || || || | || |||||| ||||||||| Sbjct 257 CTGAAAGTACACGACGGGTATAAATA--TTAGAGGTATACGGCTCAAAAGCTTCATTATT 200 Query 25081 TCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAA 25140 |||||| || || || ||||| ||||| ||||| ||||| ||||| ||||| | || Sbjct 199 TCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAATGAATTACGCAC 140 Query 25141 ACC 25143 ||| Sbjct 139 ACC 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252149929902200