Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020843.1 Length=126434 Score E Sequences producing significant alignments: (Bits) Value seq55518 104 2e-17 >seq55518 Length=4844 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 30838 ATGCCCACTTGTCTTCTGCGGGTAGTATGAAGGTAGTTTATCATAGAACACTAAGATATT 30897 ||| || |||| || || || | || | ||||| |||| || || | | | ||| Sbjct 4354 ATGTCCTGTTGTTTTTTGTGGATTATAAGTAGGTAACTTATTGTAAAAAATCATTACATT 4413 Query 30898 TTCATGAGCTTTCATCGGCATCTTCTTTGCATTCAGATGTCCTGTAGCTGATGTCTTCTC 30957 ||| ||||||||| | |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 4414 TTCGTGAGCTTTCCTAGGCATCTTTTTCGCATTTAGATGACCTGTAGCGTTAGTTTTCTC 4473 Query 30958 CCAAATCCATTCATACTTAAGACTTTTAATATTACTTGCTCCAAGAACCTTATCAAAAGG 31017 |||||||||||||||| | | | ||| |||||| ||| || | | | | |||||| Sbjct 4474 CCAAATCCATTCATACCTTAACCATTTCATATTAGATGCACCTAAAGTAATGTTAAAAGG 4533 Query 31018 TAATTGA 31024 || |||| Sbjct 4534 TATTTGA 4540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403041294846520