Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq245840 129 7e-25 seq73487 116 4e-21 seq245841 113 5e-20 >seq245840 Length=2503 Score = 129 bits (142), Expect = 7e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 139305 GCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGC 139364 || || ||| | || || || || ||||||||||| |||||||| | | | ||||| ||| Sbjct 1821 GCAAGTAGTACCTGAGCAGTACATATGTTACTGGTAGCTTTGTCGCGTGTGATATGTTGC 1762 Query 139365 TCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCT 139424 || | ||||| || || | || |||||| | ||| || | || | ||| ||| Sbjct 1761 TCGCGTGTTTGCAGCGCCATTCGGTATGCTGAATTTCCATTTGAATCGATTGAAACACCA 1702 Query 139425 ACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGA 139484 | ||||| ||| |||| | ||||| | ||| |||| |||||||| || |||||| Sbjct 1701 ATAATTCGGCCTCGTATAGAGCGTTTATATTCATCTCTTGTCGCAAAGAACGCTGCATGA 1642 Query 139485 GGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 || || ||||||||||| |||| ||||||||||| | || ||||||||||| Sbjct 1641 GGGCCGCCGTATCCCATTGGAACGCCAAACCTTTGTGAAGACCCAACAGCAATATC 1586 >seq73487 Length=1470 Score = 116 bits (128), Expect = 4e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 138201 CCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACA 138260 || || || || ||||| ||||| || || |||||||| || | ||| | ||| | || Sbjct 588 CCTGGTCCACCCCCTCCGTGTGGTATGCAAAATGTCTTGTGGAGATTCAAATGTGAGACG 529 Query 138261 TCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCG 138320 || | |||||| || | ||| || || || || ||||| | || |||||||| Sbjct 528 TCAGAACCATAATCCCCTGGGCGACAGAGTCCCACTTGAGCATTCATGTTGGCACCATCC 469 Query 138321 AGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTCTGATGT--TTGTTT 138378 | |||||||| || ||||| ||||| || | ||||| || ||| ||| | |||| | Sbjct 468 AAGTATACCTGGCCTCCATTCTCATGCACAAGGTTACAGAT--GTCGGATATCGTTGTGT 411 Query 138379 CAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 |||||||||||| || |||||||| || | ||||||||| Sbjct 410 CAAATACACCATTGGTGGATGGATAAGTCACCATAATACA 371 >seq245841 Length=808 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| || || ||||| |||||||| ||||| || || ||||| || || || Sbjct 322 ACACCAATCGGGCCACTCCCAGGGCCTCCACCACCATGAGGTATGCAGAAAGTTTTGTGC 263 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || | || || |||||||||||| | | ||| | | | | ||| ||| ||| Sbjct 262 AAGTTCATGTGGCAAACATCTGCACCAATTTTCCCTGGCTGTACGATACCAACCAAAGCA 203 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || || ||||||||||| |||||||| || ||||||| ||||| | | | || || Sbjct 202 TTCAGGTTTGCACCATCAAGATATACTTGCCCACCATGTTCATGTATCACGTCGCAAATT 143 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT 138412 | ||| || | |||||| || ||||| || || || || || ||||| Sbjct 142 TCTCTAATTGCAGATTCAAACACGCCATGCGTTGAAGGGTACGTTATCAT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576909547472320