Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020848.1 Length=76705 Score E Sequences producing significant alignments: (Bits) Value seq121188 152 3e-32 seq76541 87.8 9e-13 >seq121188 Length=15723 Score = 152 bits (168), Expect = 3e-32 Identities = 410/611 (67%), Gaps = 16/611 (3%) Strand=Plus/Plus Query 57921 AATACCGTCTACCCAGAACCAGTTACCGTGTGAGTCGTATGCCCAAACAGAAATAACAGA 57980 || |||||| |||||| ||| | || | ||||| || ||||| || || || || Sbjct 645 AACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGCCCATACTGATTGTACGGA 704 Query 57981 GAAGTC---ATTGTGTTTCTCGGCACCTGTTGCAAAGTCGGTAGTGATATAGAAGTTGTA 58037 | || | | |||||| | || || |||||||| || ||||| ||||| || || Sbjct 705 ATAATCCGCAGTTTGTTTCGACG-ACGTG--GCAAAGTCAGTGGTGATGTAGAACTTATA 761 Query 58038 GTCGTCCTTCTTCTCTAAGAGTGTGTTTCTCTTGTA-CCAACTAATGTCACAGTCGAGTA 58096 || | ||| ||| | | || |||||||| ||| | ||||| ||||||| || | | Sbjct 762 ATCCTTCTTGTTCGCAAGGA-TGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAA 820 Query 58097 TGAGACGATCCTCATCTGACATGATGCGAAGCATAAGTTCTTGGTTGAAAGTGTCCGCTT 58156 | |||| |||||| | || ||||||||||| || || ||| | || || Sbjct 821 CCAAACGAGACTCATCATCCTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTT 880 Query 58157 TACCAGTCTTGATCGCA-ATGTCGTACTGTTCTTTGACATAGTCGTATGTGAAACGGTCA 58215 |||| | ||| | | | | |||||| | ||||| | | |||||| || ||||| || Sbjct 881 TACCT-TGTTGCTTGAAGAAGTCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCT 939 Query 58216 GGCCAAGACCCACGAAAGTC-TTCTCTGGCGCAGGGGAACTGCTCACATACAGGGAAAAC 58274 ||||| | | || || |||| |||| |||| || ||| || || |||| Sbjct 940 GGCCATGCTGGTTGGAAATCCTTCTTATCAACAGGA-AACTCCTTACACACTGGCCAAAC 998 Query 58275 GTTAACCGCCCAAGCACCACTTTCGACTGCTTTATAAA-GAGGATCTTTCGCGTTAAAGG 58333 ||| ||| |||| |||||| |||| ||||| ||| | || | || ||| || |||| Sbjct 999 GTTCACCTCCCATGCACCAGACTCGATTGCTTGATACACGATG-TCGTTCTTGTCGAAGG 1057 Query 58334 GAGTTCCAGACCAAATGATAATATTGTTTTTCGGATGAAGTGCATA-TGTCACCGCCTTA 58392 |||| ||| | ||| | | |||| || ||||| || | ||| | | |||| Sbjct 1058 GAGTCCCATTCAGAATAGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAAC-CCTTG 1116 Query 58393 TAGATTGTTGCCTCTACGTTCTCAATAACTGTTGGAGACTTAGCATCTTCATCAGAGAAC 58452 || | || | | | ||| | || | ||||||||||| ||||||||||| |||| | Sbjct 1117 TAAACAGTATCGTTAATCTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATC 1176 Query 58453 AAGTCATCGAGTACCGCCAGCTGAGGACGTTTACCCATCTCTTTCGCACCACGCACACCT 58512 ||||||||||| || || ||| ||| |||||||| | |||| |||||| | ||| Sbjct 1177 AAGTCATCGAGAACTGCAAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCA 1236 Query 58513 GTCTTTGCACC 58523 | ||| ||||| Sbjct 1237 GACTTGGCACC 1247 >seq76541 Length=11138 Score = 87.8 bits (96), Expect = 9e-13 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 12597 TGGCCACCAATTCTTGTGCCGGTAATAAGCTGAGCTTGAAAGATCAGGCTCATGAGTTCG 12656 ||||||||||||| ||||| ||||| || || | |||| | ||||||||| ||||||| Sbjct 574 TGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAGGAGTTCG 515 Query 12657 CAGGCAACTACGCTCAGGATGATATCGATGATATTAAACTGATAC--CAGAGAACGATCT 12714 |||| ||||| ||| || || ||| |||| || | | ||| | | | || | ||| Sbjct 514 CAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCAGATCCCTCTGCCAAAGCTCT 455 Query 12715 TCTCCGCTATAACTTAGTGGACTGTTTAAGTACTTGGTATGTGTACAATAAGCA 12768 | || ||| | ||||| | || |||||||||||| |||||||| || Sbjct 454 --TGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATGTCTACAATAAACA 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244468245664016