Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020849.1 Length=76802 Score E Sequences producing significant alignments: (Bits) Value seq121188 131 8e-26 >seq121188 Length=15723 Score = 131 bits (144), Expect = 8e-26 Identities = 405/613 (66%), Gaps = 14/613 (2%) Strand=Plus/Plus Query 73602 ACCATCTACCCAGAACCACTCACCATTAGAGTTATATGCCCATACAGAAATAACAGAGAA 73661 ||| || |||||| ||| || ||||| |||| ||| |||||||| || || || | Sbjct 648 ACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGCCCATACTGATTGTACGGAATA 707 Query 73662 GTC---ATTATGCTTTTCTGCTCCTGTAGCAAAGTCAGTTGTAATATAAAAGTTATATTG 73718 || | | || |||| | | || ||||||||||| || || || || ||||| | Sbjct 708 ATCCGCAGTTTG--TTTCGACGAC-GTGGCAAAGTCAGTGGTGATGTAGAACTTATAATC 764 Query 73719 CTCTCTCTTACTTAAGAGGGTGTTTCTTTTGTA-CCAACTAATGTCACAGTCGTGTATGA 73777 || ||| | | ||| ||||||| ||| | ||||| ||||||| || || | | Sbjct 765 CT-TCTTGTTCGCAAGGATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCA 823 Query 73778 GGCGATCCTCATCTGACATGATGCGAAGCATAAGCTCTTGGTTAAAAGTGTCTGCTTTAC 73837 ||| |||||| | || |||||||||||||| || || | || ||||| Sbjct 824 AACGAGACTCATCATCCTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTAC 883 Query 73838 CGGTCTTGATCGCA-ATGTCGTACTGTTCTTTGACATAGTCGTATGTGAAACGGTCAGGC 73896 | | ||| | | | | |||||| | ||||| | | |||||| || ||||| || ||| Sbjct 884 CT-TGTTGCTTGAAGAAGTCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGC 942 Query 73897 CAAGACCCACGAAAGTC-TTCTCTGGGGCAGGGGAACTGTTCACACACAGGGAAAACGTT 73955 || | | || || |||| |||| |||| | |||||| || ||||||| Sbjct 943 CATGCTGGTTGGAAATCCTTCTTATCAACAGGA-AACTCCTTACACACTGGCCAAACGTT 1001 Query 73956 AACCGCCCAAGCACCACTTTCAACTGCTTTATATAAGGGATCTTTCGCGTTAAAGGGAGT 74015 ||| |||| |||||| || | ||||| ||| | | || ||| || |||||||| Sbjct 1002 CACCTCCCATGCACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGT 1061 Query 74016 TCCAGACCAAATGATAATATTGTTCTTTGGATGAAGTGCATA-TGTAACTGCCTTATAAA 74074 ||| | ||| | | || | ||| ||||| || | ||||| |||| |||| Sbjct 1062 CCCATTCAGAATAGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAAC-CCTTGTAAA 1120 Query 74075 TTGTAGCCTCTACGTTCTCAATAACTGTAGGTGATTTAGCATCCTCATCTGAAAACAAGT 74134 ||| | | | ||| | || | || || || || ||||| |||||||| | ||||| Sbjct 1121 CAGTATCGTTAATCTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGT 1180 Query 74135 CATCGAGTATTGCTAACTGAGGGCGTTTACCCATCTCTTTAGCACCACGAACACCTGTCT 74194 ||||||| | ||| | | ||| |||||||| | || | |||||| | ||| | || Sbjct 1181 CATCGAGAACTGCAAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACT 1240 Query 74195 TGGCCCCGTACAT 74207 |||| ||| |||| Sbjct 1241 TGGCACCGAACAT 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244777553829688